Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Gm10275-201ENSMUST00000092620 635 ntBASIC11.76□□□□□ -0.53
Col8a1Q00780 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC11.76□□□□□ -0.53
Col8a1Q00780 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC11.76□□□□□ -0.53
Col8a1Q00780 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC11.76□□□□□ -0.53
Col8a1Q00780 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC11.76□□□□□ -0.53
Col8a1Q00780 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Col8a1Q00780 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC11.76□□□□□ -0.53
Col8a1Q00780 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Col8a1Q00780 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Col8a1Q00780 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col8a1Q00780 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
Col8a1Q00780 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC11.75□□□□□ -0.53
Col8a1Q00780 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC11.75□□□□□ -0.53
Col8a1Q00780 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC11.75□□□□□ -0.53
Col8a1Q00780 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC11.75□□□□□ -0.53
Col8a1Q00780 Gm9124-201ENSMUST00000191789 1092 ntBASIC11.75□□□□□ -0.53
Col8a1Q00780 Gm9113-201ENSMUST00000192510 1018 ntBASIC11.75□□□□□ -0.53
Col8a1Q00780 Gm5069-202ENSMUST00000192714 1011 ntBASIC11.75□□□□□ -0.53
Col8a1Q00780 Gm9131-201ENSMUST00000193557 1089 ntBASIC11.75□□□□□ -0.53
Col8a1Q00780 Gm9121-201ENSMUST00000193749 1071 ntBASIC11.75□□□□□ -0.53
Col8a1Q00780 Gm6334-201ENSMUST00000207083 228 ntBASIC11.75□□□□□ -0.53
Col8a1Q00780 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Gm5425-201ENSMUST00000214125 459 ntBASIC11.75□□□□□ -0.53
Col8a1Q00780 Gm6983-201ENSMUST00000214912 628 ntBASIC11.75□□□□□ -0.53
Col8a1Q00780 CT573034.1-201ENSMUST00000222983 313 ntBASIC11.75□□□□□ -0.53
Col8a1Q00780 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Mir433-201ENSMUST00000093564 124 ntBASIC11.75□□□□□ -0.53
Col8a1Q00780 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Col8a1Q00780 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Col8a1Q00780 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
Col8a1Q00780 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Col8a1Q00780 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Gm5049-201ENSMUST00000195878 1590 ntBASIC11.75□□□□□ -0.53
Col8a1Q00780 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Col8a1Q00780 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Col8a1Q00780 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Gm8810-201ENSMUST00000172895 754 ntBASIC11.74□□□□□ -0.53
Col8a1Q00780 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC11.74□□□□□ -0.53
Col8a1Q00780 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC11.74□□□□□ -0.53
Col8a1Q00780 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Gm43068-201ENSMUST00000201095 1273 ntBASIC11.74□□□□□ -0.53
Col8a1Q00780 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC11.74□□□□□ -0.53
Col8a1Q00780 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Col8a1Q00780 Gm21038-201ENSMUST00000222205 1383 ntBASIC11.74□□□□□ -0.53
Col8a1Q00780 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Col8a1Q00780 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms