Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col3a1P08121 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC16.29■□□□□ 0.2
Col3a1P08121 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Gm6447-201ENSMUST00000118905 835 ntBASIC16.29■□□□□ 0.2
Col3a1P08121 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
Col3a1P08121 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 AC122305.4-201ENSMUST00000216159 1206 ntBASIC16.29■□□□□ 0.2
Col3a1P08121 Tyms-ps-201ENSMUST00000219550 915 ntBASIC16.29■□□□□ 0.2
Col3a1P08121 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col3a1P08121 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col3a1P08121 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col3a1P08121 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col3a1P08121 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Col3a1P08121 Gm8706-201ENSMUST00000197372 1491 ntBASIC16.28■□□□□ 0.2
Col3a1P08121 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Col3a1P08121 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Col3a1P08121 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Gm11661-201ENSMUST00000121761 1327 ntBASIC16.28■□□□□ 0.2
Col3a1P08121 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Col3a1P08121 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC16.28■□□□□ 0.2
Col3a1P08121 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 AC173210.1-201ENSMUST00000222341 1131 ntBASIC16.28■□□□□ 0.2
Col3a1P08121 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col3a1P08121 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col3a1P08121 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col3a1P08121 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col3a1P08121 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Col3a1P08121 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col3a1P08121 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col3a1P08121 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col3a1P08121 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col3a1P08121 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col3a1P08121 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col3a1P08121 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col3a1P08121 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC16.27■□□□□ 0.19
Col3a1P08121 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC16.27■□□□□ 0.19
Col3a1P08121 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC16.27■□□□□ 0.19
Col3a1P08121 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC16.27■□□□□ 0.19
Col3a1P08121 Gm44974-201ENSMUST00000206387 1279 ntBASIC16.27■□□□□ 0.19
Col3a1P08121 Gm19309-201ENSMUST00000218295 205 ntBASIC16.27■□□□□ 0.19
Col3a1P08121 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col3a1P08121 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col3a1P08121 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC16.27■□□□□ 0.19
Col3a1P08121 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col3a1P08121 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col3a1P08121 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Col3a1P08121 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col3a1P08121 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col3a1P08121 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col3a1P08121 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Col3a1P08121 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Gm27572-201ENSMUST00000183702 255 ntBASIC16.26■□□□□ 0.19
Col3a1P08121 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Gm38002-201ENSMUST00000193255 180 ntBASIC16.26■□□□□ 0.19
Col3a1P08121 Gm19184-201ENSMUST00000196798 928 ntBASIC16.26■□□□□ 0.19
Col3a1P08121 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC16.26■□□□□ 0.19
Col3a1P08121 Gm7172-201ENSMUST00000218047 1152 ntBASIC16.26■□□□□ 0.19
Col3a1P08121 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC16.26■□□□□ 0.19
Col3a1P08121 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Gm16372-201ENSMUST00000073088 450 ntBASIC16.26■□□□□ 0.19
Col3a1P08121 Snora73a-201ENSMUST00000082453 205 ntBASIC16.26■□□□□ 0.19
Col3a1P08121 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Col3a1P08121 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col3a1P08121 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC16.26■□□□□ 0.19
Col3a1P08121 Gm18222-201ENSMUST00000202416 1387 ntBASIC16.26■□□□□ 0.19
Col3a1P08121 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Col3a1P08121 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Col3a1P08121 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Col3a1P08121 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Col3a1P08121 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Col3a1P08121 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Col3a1P08121 Gm13369-201ENSMUST00000119442 987 ntBASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms