Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC12.74□□□□□ -0.37
Cops4O88544 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC12.74□□□□□ -0.37
Cops4O88544 Gm38355-201ENSMUST00000192514 1570 ntBASIC12.74□□□□□ -0.37
Cops4O88544 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Cops4O88544 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Cops4O88544 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC12.74□□□□□ -0.37
Cops4O88544 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Cops4O88544 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC12.74□□□□□ -0.37
Cops4O88544 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC12.74□□□□□ -0.37
Cops4O88544 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Gm7229-201ENSMUST00000214719 1007 ntBASIC12.74□□□□□ -0.37
Cops4O88544 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC12.74□□□□□ -0.37
Cops4O88544 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Cops4O88544 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Cops4O88544 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.74□□□□□ -0.37
Cops4O88544 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC12.74□□□□□ -0.37
Cops4O88544 Gm7899-201ENSMUST00000192935 1897 ntBASIC12.74□□□□□ -0.37
Cops4O88544 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cops4O88544 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Cops4O88544 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Cops4O88544 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC12.73□□□□□ -0.37
Cops4O88544 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC12.73□□□□□ -0.37
Cops4O88544 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC12.73□□□□□ -0.37
Cops4O88544 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Gm28386-201ENSMUST00000189147 1849 ntBASIC12.73□□□□□ -0.37
Cops4O88544 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Cops4O88544 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
Cops4O88544 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC12.73□□□□□ -0.37
Cops4O88544 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Cops4O88544 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC12.72□□□□□ -0.37
Cops4O88544 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC12.72□□□□□ -0.37
Cops4O88544 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Cops4O88544 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Cops4O88544 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
Cops4O88544 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC12.72□□□□□ -0.37
Cops4O88544 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Cops4O88544 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC12.72□□□□□ -0.37
Cops4O88544 Gm5712-201ENSMUST00000199748 1043 ntBASIC12.72□□□□□ -0.37
Cops4O88544 Gm5364-201ENSMUST00000216789 889 ntBASIC12.72□□□□□ -0.37
Cops4O88544 AC133598.3-202ENSMUST00000224219 531 ntBASIC12.72□□□□□ -0.37
Cops4O88544 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
Cops4O88544 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Cops4O88544 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC12.72□□□□□ -0.37
Cops4O88544 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Cops4O88544 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms