Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim56Q80VI1 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Gm21038-201ENSMUST00000222205 1383 ntBASIC16.28■□□□□ 0.2
Trim56Q80VI1 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim56Q80VI1 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC16.28■□□□□ 0.2
Trim56Q80VI1 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Atp5j2-202ENSMUST00000161741 955 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Gm18018-201ENSMUST00000198273 408 ntBASIC16.28■□□□□ 0.2
Trim56Q80VI1 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC16.28■□□□□ 0.2
Trim56Q80VI1 AC155286.1-201ENSMUST00000218632 448 ntBASIC16.28■□□□□ 0.2
Trim56Q80VI1 AC155258.1-201ENSMUST00000219303 253 ntBASIC16.28■□□□□ 0.2
Trim56Q80VI1 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Scin-202ENSMUST00000078481 2654 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim56Q80VI1 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.2
Trim56Q80VI1 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Gm12485-201ENSMUST00000119641 291 ntBASIC16.27■□□□□ 0.2
Trim56Q80VI1 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC16.27■□□□□ 0.2
Trim56Q80VI1 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Mir7654-201ENSMUST00000185082 70 ntBASIC16.27■□□□□ 0.2
Trim56Q80VI1 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC16.27■□□□□ 0.2
Trim56Q80VI1 Gm6745-201ENSMUST00000199216 526 ntBASIC16.27■□□□□ 0.2
Trim56Q80VI1 Gm9908-201ENSMUST00000211534 448 ntBASIC16.27■□□□□ 0.2
Trim56Q80VI1 AC162801.1-201ENSMUST00000220612 198 ntBASIC16.27■□□□□ 0.2
Trim56Q80VI1 AC154239.3-201ENSMUST00000226933 674 ntBASIC16.27■□□□□ 0.2
Trim56Q80VI1 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC16.27■□□□□ 0.2
Trim56Q80VI1 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC16.27■□□□□ 0.19
Trim56Q80VI1 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC16.27■□□□□ 0.19
Trim56Q80VI1 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Trim56Q80VI1 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trim56Q80VI1 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trim56Q80VI1 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trim56Q80VI1 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Trim56Q80VI1 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trim56Q80VI1 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trim56Q80VI1 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trim56Q80VI1 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Gm12091-201ENSMUST00000146791 830 ntBASIC16.26■□□□□ 0.19
Trim56Q80VI1 Gm9794-201ENSMUST00000202370 423 ntBASIC16.26■□□□□ 0.19
Trim56Q80VI1 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Il17rd-203ENSMUST00000225146 3366 ntBASIC16.26■□□□□ 0.19
Trim56Q80VI1 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC16.26■□□□□ 0.19
Trim56Q80VI1 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim56Q80VI1 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms