Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Gm2445-201ENSMUST00000182798 989 ntBASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Syt7-204ENSMUST00000223586 1344 ntBASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3bQ3ULL6 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Gm38577-201ENSMUST00000221531 4545 ntBASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Mir698-201ENSMUST00000102164 109 ntBASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Gm13385-201ENSMUST00000121089 220 ntBASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Gm24694-201ENSMUST00000180054 110 ntBASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Gm27663-201ENSMUST00000184839 110 ntBASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 AC165157.4-201ENSMUST00000220587 139 ntBASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3bQ3ULL6 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Gm6912-201ENSMUST00000117218 544 ntBASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 AC166997.1-201ENSMUST00000225122 572 ntBASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Gm10710-201ENSMUST00000047876 3971 ntBASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3bQ3ULL6 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Upf3bQ3ULL6 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms