Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Limch1Q3UH68 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Gm45779-201ENSMUST00000212189 4064 ntBASIC16.28■□□□□ 0.2
Limch1Q3UH68 Gm45667-201ENSMUST00000210380 1316 ntBASIC16.28■□□□□ 0.2
Limch1Q3UH68 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC16.28■□□□□ 0.2
Limch1Q3UH68 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC16.28■□□□□ 0.2
Limch1Q3UH68 Gm14928-201ENSMUST00000120198 477 ntBASIC16.28■□□□□ 0.2
Limch1Q3UH68 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC16.28■□□□□ 0.2
Limch1Q3UH68 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Gm28631-201ENSMUST00000190740 334 ntBASIC16.28■□□□□ 0.2
Limch1Q3UH68 Gm43703-201ENSMUST00000200523 763 ntBASIC16.28■□□□□ 0.2
Limch1Q3UH68 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Gm46209-201ENSMUST00000217912 553 ntBASIC16.28■□□□□ 0.2
Limch1Q3UH68 Dupd1-202ENSMUST00000224735 548 ntBASIC16.28■□□□□ 0.2
Limch1Q3UH68 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Limch1Q3UH68 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Gm4875-201ENSMUST00000118257 786 ntBASIC16.27■□□□□ 0.2
Limch1Q3UH68 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC16.27■□□□□ 0.2
Limch1Q3UH68 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC16.27■□□□□ 0.2
Limch1Q3UH68 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Limch1Q3UH68 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Limch1Q3UH68 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Limch1Q3UH68 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Limch1Q3UH68 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Limch1Q3UH68 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Limch1Q3UH68 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Limch1Q3UH68 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Limch1Q3UH68 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Limch1Q3UH68 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Limch1Q3UH68 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Limch1Q3UH68 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Limch1Q3UH68 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Limch1Q3UH68 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC16.26■□□□□ 0.19
Limch1Q3UH68 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC16.26■□□□□ 0.19
Limch1Q3UH68 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Gm2445-201ENSMUST00000182798 989 ntBASIC16.26■□□□□ 0.19
Limch1Q3UH68 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC16.26■□□□□ 0.19
Limch1Q3UH68 Gm18027-201ENSMUST00000218947 619 ntBASIC16.26■□□□□ 0.19
Limch1Q3UH68 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Limch1Q3UH68 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 64.8 ms