Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col28a1Q2UY11 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
Col28a1Q2UY11 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col28a1Q2UY11 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col28a1Q2UY11 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col28a1Q2UY11 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col28a1Q2UY11 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col28a1Q2UY11 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col28a1Q2UY11 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Mir7023-201ENSMUST00000185093 64 ntBASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Gm20553-201ENSMUST00000204205 844 ntBASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Thap2-203ENSMUST00000218989 527 ntBASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col28a1Q2UY11 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Rprl2-201ENSMUST00000157150 290 ntBASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Gm18889-201ENSMUST00000174284 929 ntBASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Gm5628-201ENSMUST00000222318 1049 ntBASIC13.44□□□□□ -0.26
Col28a1Q2UY11 AC140397.2-201ENSMUST00000224213 834 ntBASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Gm10154-201ENSMUST00000084445 354 ntBASIC13.44□□□□□ -0.26
Col28a1Q2UY11 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
Col28a1Q2UY11 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Col28a1Q2UY11 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 69.4 ms