Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Col17a1Q07563 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC20.75■□□□□ 0.91
Col17a1Q07563 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Mir181d-201ENSMUST00000102383 72 ntBASIC20.75■□□□□ 0.91
Col17a1Q07563 Mir7076-201ENSMUST00000183519 74 ntBASIC20.75■□□□□ 0.91
Col17a1Q07563 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC20.75■□□□□ 0.91
Col17a1Q07563 Gm45398-201ENSMUST00000210561 165 ntBASIC20.75■□□□□ 0.91
Col17a1Q07563 Tepp-207ENSMUST00000212056 613 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Col17a1Q07563 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col17a1Q07563 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC20.75■□□□□ 0.91
Col17a1Q07563 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC20.74■□□□□ 0.91
Col17a1Q07563 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Gm19680-201ENSMUST00000095050 1513 ntBASIC20.74■□□□□ 0.91
Col17a1Q07563 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC20.74■□□□□ 0.91
Col17a1Q07563 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Gm6447-201ENSMUST00000118905 835 ntBASIC20.74■□□□□ 0.91
Col17a1Q07563 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC20.74■□□□□ 0.91
Col17a1Q07563 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC20.74■□□□□ 0.91
Col17a1Q07563 AC131997.1-201ENSMUST00000228611 1229 ntBASIC20.74■□□□□ 0.91
Col17a1Q07563 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Snora73b-201ENSMUST00000083419 205 ntBASIC20.74■□□□□ 0.91
Col17a1Q07563 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Col17a1Q07563 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col17a1Q07563 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Gm11839-201ENSMUST00000120647 1953 ntBASIC20.73■□□□□ 0.91
Col17a1Q07563 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Col17a1Q07563 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC20.73■□□□□ 0.91
Col17a1Q07563 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC20.73■□□□□ 0.91
Col17a1Q07563 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Col17a1Q07563 CT030637.1-201ENSMUST00000228016 669 ntBASIC20.73■□□□□ 0.91
Col17a1Q07563 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Col17a1Q07563 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Col17a1Q07563 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col17a1Q07563 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Gm15036-201ENSMUST00000118880 400 ntBASIC20.72■□□□□ 0.91
Col17a1Q07563 Gm12539-201ENSMUST00000121549 1098 ntBASIC20.72■□□□□ 0.91
Col17a1Q07563 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Gm8228-201ENSMUST00000189949 2192 ntBASIC20.72■□□□□ 0.91
Col17a1Q07563 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
Col17a1Q07563 Gm44616-201ENSMUST00000206417 1732 ntBASIC20.72■□□□□ 0.91
Col17a1Q07563 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Gm13539-202ENSMUST00000211245 552 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Col17a1Q07563 AC153505.1-201ENSMUST00000218819 1071 ntBASIC20.72■□□□□ 0.91
Col17a1Q07563 Gm8768-201ENSMUST00000220020 826 ntBASIC20.72■□□□□ 0.91
Col17a1Q07563 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col17a1Q07563 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Col17a1Q07563 AC133083.1-201ENSMUST00000221736 2209 ntBASIC20.71■□□□□ 0.91
Col17a1Q07563 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col17a1Q07563 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Col17a1Q07563 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col17a1Q07563 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms