Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cux1P53564 Gm26513-201ENSMUST00000181802 2489 ntBASIC20.92■□□□□ 0.94
Cux1P53564 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cux1P53564 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cux1P53564 Gm2231-201ENSMUST00000125661 612 ntBASIC20.92■□□□□ 0.94
Cux1P53564 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC20.92■□□□□ 0.94
Cux1P53564 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC20.92■□□□□ 0.94
Cux1P53564 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Cux1P53564 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cux1P53564 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Cux1P53564 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Cux1P53564 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC20.92■□□□□ 0.94
Cux1P53564 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
Cux1P53564 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cux1P53564 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cux1P53564 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cux1P53564 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cux1P53564 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cux1P53564 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Cux1P53564 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cux1P53564 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cux1P53564 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cux1P53564 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Cux1P53564 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC20.91■□□□□ 0.94
Cux1P53564 Gm37042-201ENSMUST00000193816 581 ntBASIC20.91■□□□□ 0.94
Cux1P53564 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cux1P53564 Mmp14-206ENSMUST00000225641 3238 ntBASIC20.91■□□□□ 0.94
Cux1P53564 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cux1P53564 Gm44207-201ENSMUST00000204568 1424 ntBASIC20.91■□□□□ 0.94
Cux1P53564 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC20.91■□□□□ 0.94
Cux1P53564 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
Cux1P53564 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Cux1P53564 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Mir7070-201ENSMUST00000183657 86 ntBASIC20.9■□□□□ 0.94
Cux1P53564 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC20.9■□□□□ 0.94
Cux1P53564 AC173210.1-201ENSMUST00000222341 1131 ntBASIC20.9■□□□□ 0.94
Cux1P53564 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Cux1P53564 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Cux1P53564 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Cux1P53564 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Cux1P53564 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC20.89■□□□□ 0.94
Cux1P53564 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC20.89■□□□□ 0.94
Cux1P53564 Gm10608-202ENSMUST00000213924 676 ntBASIC20.89■□□□□ 0.94
Cux1P53564 AC093022.1-201ENSMUST00000226949 1072 ntBASIC20.89■□□□□ 0.94
Cux1P53564 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Cux1P53564 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Cux1P53564 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Cux1P53564 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
Cux1P53564 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC20.89■□□□□ 0.93
Cux1P53564 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cux1P53564 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cux1P53564 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cux1P53564 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
Cux1P53564 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Cux1P53564 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cux1P53564 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cux1P53564 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cux1P53564 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cux1P53564 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cux1P53564 Gm38049-201ENSMUST00000195698 1372 ntBASIC20.89■□□□□ 0.93
Cux1P53564 Gm7993-201ENSMUST00000200970 1384 ntBASIC20.89■□□□□ 0.93
Cux1P53564 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Cux1P53564 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cux1P53564 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cux1P53564 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cux1P53564 Gm5781-201ENSMUST00000219792 443 ntBASIC20.88■□□□□ 0.93
Cux1P53564 AC132317.1-201ENSMUST00000227227 962 ntBASIC20.88■□□□□ 0.93
Cux1P53564 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC20.88■□□□□ 0.93
Cux1P53564 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cux1P53564 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cux1P53564 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Cux1P53564 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cux1P53564 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cux1P53564 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Cux1P53564 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cux1P53564 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cux1P53564 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC20.88■□□□□ 0.93
Cux1P53564 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cux1P53564 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cux1P53564 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC20.88■□□□□ 0.93
Cux1P53564 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC20.88■□□□□ 0.93
Cux1P53564 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Cux1P53564 AC122371.3-201ENSMUST00000223402 1061 ntBASIC20.88■□□□□ 0.93
Cux1P53564 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cux1P53564 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms