Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC17.89■□□□□ 0.45
Col18a1P39061 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC17.89■□□□□ 0.45
Col18a1P39061 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC17.89■□□□□ 0.45
Col18a1P39061 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC17.89■□□□□ 0.45
Col18a1P39061 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC17.89■□□□□ 0.45
Col18a1P39061 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Col18a1P39061 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC17.89■□□□□ 0.45
Col18a1P39061 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 Gm13296-201ENSMUST00000117854 997 ntBASIC17.89■□□□□ 0.45
Col18a1P39061 Gm5070-201ENSMUST00000177599 862 ntBASIC17.89■□□□□ 0.45
Col18a1P39061 Gm38297-201ENSMUST00000195122 1057 ntBASIC17.89■□□□□ 0.45
Col18a1P39061 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col18a1P39061 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC17.89■□□□□ 0.45
Col18a1P39061 Gm5369-201ENSMUST00000217499 588 ntBASIC17.89■□□□□ 0.45
Col18a1P39061 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC17.88■□□□□ 0.45
Col18a1P39061 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC17.88■□□□□ 0.45
Col18a1P39061 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC17.88■□□□□ 0.45
Col18a1P39061 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Gm12266-201ENSMUST00000120311 962 ntBASIC17.88■□□□□ 0.45
Col18a1P39061 Gm14665-201ENSMUST00000122294 557 ntBASIC17.88■□□□□ 0.45
Col18a1P39061 Gm19353-201ENSMUST00000184561 445 ntBASIC17.88■□□□□ 0.45
Col18a1P39061 Gm38092-201ENSMUST00000195600 653 ntBASIC17.88■□□□□ 0.45
Col18a1P39061 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC17.88■□□□□ 0.45
Col18a1P39061 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Gm10179-201ENSMUST00000086233 688 ntBASIC17.88■□□□□ 0.45
Col18a1P39061 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col18a1P39061 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Col18a1P39061 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC17.87■□□□□ 0.45
Col18a1P39061 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC17.87■□□□□ 0.45
Col18a1P39061 Anp32a-205ENSMUST00000135395 924 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Col18a1P39061 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Gm8365-201ENSMUST00000197334 648 ntBASIC17.87■□□□□ 0.45
Col18a1P39061 Gm5904-201ENSMUST00000210286 865 ntBASIC17.87■□□□□ 0.45
Col18a1P39061 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC17.87■□□□□ 0.45
Col18a1P39061 CT009713.10-201ENSMUST00000225013 1986 ntBASIC17.87■□□□□ 0.45
Col18a1P39061 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col18a1P39061 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC17.86■□□□□ 0.45
Col18a1P39061 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC17.86■□□□□ 0.45
Col18a1P39061 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Col18a1P39061 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC17.86■□□□□ 0.45
Col18a1P39061 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC17.86■□□□□ 0.45
Col18a1P39061 Gm7600-201ENSMUST00000209657 785 ntBASIC17.86■□□□□ 0.45
Col18a1P39061 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC17.86■□□□□ 0.45
Col18a1P39061 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Col18a1P39061 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Col18a1P39061 Gm44999-201ENSMUST00000207456 1493 ntBASIC17.86■□□□□ 0.45
Col18a1P39061 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Col18a1P39061 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
Col18a1P39061 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Col18a1P39061 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col18a1P39061 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Col18a1P39061 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC17.86■□□□□ 0.45
Col18a1P39061 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC17.86■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms