Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cd40lgP27548 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Cd40lgP27548 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Cd40lgP27548 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Cd40lgP27548 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cd40lgP27548 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cd40lgP27548 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cd40lgP27548 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.79□□□□□ -0.36
Cd40lgP27548 Gm12882-201ENSMUST00000121696 517 ntBASIC12.79□□□□□ -0.36
Cd40lgP27548 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Mir7684-201ENSMUST00000183858 60 ntBASIC12.79□□□□□ -0.36
Cd40lgP27548 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Gm38294-201ENSMUST00000192831 381 ntBASIC12.79□□□□□ -0.36
Cd40lgP27548 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Ighv1-25-201ENSMUST00000195638 345 ntBASIC12.79□□□□□ -0.36
Cd40lgP27548 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Gm37297-201ENSMUST00000192974 2384 ntBASIC12.79□□□□□ -0.36
Cd40lgP27548 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC12.79□□□□□ -0.36
Cd40lgP27548 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cd40lgP27548 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC12.78□□□□□ -0.36
Cd40lgP27548 Gm14451-201ENSMUST00000121581 1542 ntBASIC12.78□□□□□ -0.36
Cd40lgP27548 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC12.78□□□□□ -0.36
Cd40lgP27548 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Cd40lgP27548 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Gm13223-201ENSMUST00000118609 747 ntBASIC12.78□□□□□ -0.36
Cd40lgP27548 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC12.78□□□□□ -0.36
Cd40lgP27548 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC12.78□□□□□ -0.36
Cd40lgP27548 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC12.78□□□□□ -0.36
Cd40lgP27548 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC12.78□□□□□ -0.36
Cd40lgP27548 Gm9229-201ENSMUST00000222777 126 ntBASIC12.78□□□□□ -0.36
Cd40lgP27548 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC12.78□□□□□ -0.36
Cd40lgP27548 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cd40lgP27548 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC12.78□□□□□ -0.36
Cd40lgP27548 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC12.78□□□□□ -0.36
Cd40lgP27548 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Cd40lgP27548 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.36
Cd40lgP27548 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
Cd40lgP27548 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cd40lgP27548 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cd40lgP27548 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Cd40lgP27548 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Cd40lgP27548 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cd40lgP27548 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cd40lgP27548 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cd40lgP27548 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC12.77□□□□□ -0.37
Cd40lgP27548 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cd40lgP27548 Gm3436-201ENSMUST00000179930 840 ntBASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms