Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm12997-201ENSMUST00000120207 640 ntBASIC15.98■□□□□ 0.15
Col1a1P11087 Gm16479-201ENSMUST00000121706 932 ntBASIC15.98■□□□□ 0.15
Col1a1P11087 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC15.98■□□□□ 0.15
Col1a1P11087 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC15.98■□□□□ 0.15
Col1a1P11087 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC15.98■□□□□ 0.15
Col1a1P11087 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC15.98■□□□□ 0.15
Col1a1P11087 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC15.98■□□□□ 0.15
Col1a1P11087 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC15.98■□□□□ 0.15
Col1a1P11087 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC15.98■□□□□ 0.15
Col1a1P11087 Gm5781-201ENSMUST00000219792 443 ntBASIC15.98■□□□□ 0.15
Col1a1P11087 AC022775.2-201ENSMUST00000227885 646 ntBASIC15.98■□□□□ 0.15
Col1a1P11087 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
Col1a1P11087 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 AC113441.2-201ENSMUST00000221538 1468 ntBASIC15.98■□□□□ 0.15
Col1a1P11087 Gm11960-202ENSMUST00000181063 2858 ntBASIC15.98■□□□□ 0.15
Col1a1P11087 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC15.98■□□□□ 0.15
Col1a1P11087 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
Col1a1P11087 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC15.98■□□□□ 0.15
Col1a1P11087 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Col1a1P11087 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Col1a1P11087 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC15.97■□□□□ 0.15
Col1a1P11087 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Gm24548-201ENSMUST00000158650 108 ntBASIC15.97■□□□□ 0.15
Col1a1P11087 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC15.97■□□□□ 0.15
Col1a1P11087 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC15.97■□□□□ 0.15
Col1a1P11087 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC15.97■□□□□ 0.15
Col1a1P11087 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC15.97■□□□□ 0.15
Col1a1P11087 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Col1a1P11087 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Col1a1P11087 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Col1a1P11087 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
Col1a1P11087 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Gm11222-201ENSMUST00000119005 738 ntBASIC15.97■□□□□ 0.15
Col1a1P11087 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC15.97■□□□□ 0.15
Col1a1P11087 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC15.97■□□□□ 0.15
Col1a1P11087 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC15.97■□□□□ 0.15
Col1a1P11087 AC155637.1-201ENSMUST00000218560 636 ntBASIC15.97■□□□□ 0.15
Col1a1P11087 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC15.97■□□□□ 0.15
Col1a1P11087 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC15.97■□□□□ 0.15
Col1a1P11087 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col1a1P11087 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col1a1P11087 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col1a1P11087 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col1a1P11087 Gm43598-201ENSMUST00000202482 2479 ntBASIC15.96■□□□□ 0.15
Col1a1P11087 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col1a1P11087 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col1a1P11087 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
Col1a1P11087 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col1a1P11087 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col1a1P11087 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Col1a1P11087 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Col1a1P11087 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Col1a1P11087 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col1a1P11087 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
Col1a1P11087 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col1a1P11087 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC15.96■□□□□ 0.15
Col1a1P11087 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC15.96■□□□□ 0.15
Col1a1P11087 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col1a1P11087 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
Col1a1P11087 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
Col1a1P11087 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
Col1a1P11087 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Col1a1P11087 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC15.96■□□□□ 0.14
Col1a1P11087 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC15.96■□□□□ 0.14
Col1a1P11087 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC15.96■□□□□ 0.14
Col1a1P11087 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col1a1P11087 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col1a1P11087 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col1a1P11087 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col1a1P11087 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col1a1P11087 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col1a1P11087 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Col1a1P11087 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.14
Col1a1P11087 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
Col1a1P11087 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms