Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Gm15957-201ENSMUST00000118893 974 ntBASIC14.91□□□□□ -0.02
Vti1aO89116 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC14.91□□□□□ -0.02
Vti1aO89116 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vti1aO89116 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vti1aO89116 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Vti1aO89116 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC14.91□□□□□ -0.02
Vti1aO89116 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vti1aO89116 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Vti1aO89116 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vti1aO89116 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Vti1aO89116 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vti1aO89116 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vti1aO89116 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vti1aO89116 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vti1aO89116 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vti1aO89116 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vti1aO89116 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC14.91□□□□□ -0.02
Vti1aO89116 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Vti1aO89116 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Vti1aO89116 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC14.9□□□□□ -0.02
Vti1aO89116 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC14.9□□□□□ -0.02
Vti1aO89116 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Gm17150-201ENSMUST00000165577 381 ntBASIC14.9□□□□□ -0.02
Vti1aO89116 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC14.9□□□□□ -0.02
Vti1aO89116 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Vti1aO89116 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Vti1aO89116 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC14.9□□□□□ -0.02
Vti1aO89116 Gm5279-201ENSMUST00000199575 745 ntBASIC14.9□□□□□ -0.02
Vti1aO89116 Gm44719-201ENSMUST00000206404 149 ntBASIC14.9□□□□□ -0.02
Vti1aO89116 Gm18307-201ENSMUST00000206864 949 ntBASIC14.9□□□□□ -0.02
Vti1aO89116 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Ssr1-204ENSMUST00000225319 1610 ntBASIC14.9□□□□□ -0.02
Vti1aO89116 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Vti1aO89116 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC14.9□□□□□ -0.02
Vti1aO89116 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Vti1aO89116 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Vti1aO89116 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Vti1aO89116 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Vti1aO89116 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC14.89□□□□□ -0.03
Vti1aO89116 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Vti1aO89116 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Mir7085-201ENSMUST00000184353 66 ntBASIC14.89□□□□□ -0.03
Vti1aO89116 Gm27701-201ENSMUST00000184498 110 ntBASIC14.89□□□□□ -0.03
Vti1aO89116 Gm27892-201ENSMUST00000185017 106 ntBASIC14.89□□□□□ -0.03
Vti1aO89116 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC14.89□□□□□ -0.03
Vti1aO89116 Gm44487-201ENSMUST00000205145 325 ntBASIC14.89□□□□□ -0.03
Vti1aO89116 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Vti1aO89116 AC150560.1-201ENSMUST00000227731 1187 ntBASIC14.89□□□□□ -0.03
Vti1aO89116 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Vti1aO89116 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
Vti1aO89116 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Vti1aO89116 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.89□□□□□ -0.03
Vti1aO89116 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Vti1aO89116 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vti1aO89116 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vti1aO89116 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.88□□□□□ -0.03
Vti1aO89116 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vti1aO89116 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vti1aO89116 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vti1aO89116 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vti1aO89116 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Vti1aO89116 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Vti1aO89116 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms