Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Smco4Q9JIS3 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 AC157650.3-201ENSMUST00000225058 1476 ntBASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Gm6159-201ENSMUST00000191249 1724 ntBASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Gm44086-201ENSMUST00000203251 2349 ntBASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Gm25927-201ENSMUST00000175058 117 ntBASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Gm9726-201ENSMUST00000180321 678 ntBASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Gm10176-201ENSMUST00000159707 2264 ntBASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Smco4Q9JIS3 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 AC130713.1-201ENSMUST00000228853 1096 ntBASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Gm37472-201ENSMUST00000192342 4052 ntBASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Smco4Q9JIS3 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Smco4Q9JIS3 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Smco4Q9JIS3 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms