Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Gm45059-201ENSMUST00000205558 1077 ntBASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Gm12626-201ENSMUST00000117339 1983 ntBASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Gm12623-201ENSMUST00000119849 1983 ntBASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Ushbp1Q8R370 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Gm12091-201ENSMUST00000146791 830 ntBASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Gm45195-201ENSMUST00000205597 1008 ntBASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Gm9908-201ENSMUST00000211534 448 ntBASIC15.53■□□□□ 0.08
Ushbp1Q8R370 AC125350.2-201ENSMUST00000224737 727 ntBASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Gm42872-201ENSMUST00000200026 1967 ntBASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ushbp1Q8R370 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 AC159649.2-201ENSMUST00000222984 3223 ntBASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Ighv1-25-201ENSMUST00000195638 345 ntBASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Gm42612-201ENSMUST00000197986 623 ntBASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Gm43170-201ENSMUST00000199827 612 ntBASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Gm43703-201ENSMUST00000200523 763 ntBASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Gm18027-201ENSMUST00000218947 619 ntBASIC15.52■□□□□ 0.08
Ushbp1Q8R370 AC121804.3-201ENSMUST00000223420 295 ntBASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Ushbp1Q8R370 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Ushbp1Q8R370 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
Ushbp1Q8R370 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Ushbp1Q8R370 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC15.52■□□□□ 0.07
Ushbp1Q8R370 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ushbp1Q8R370 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ushbp1Q8R370 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ushbp1Q8R370 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ushbp1Q8R370 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ushbp1Q8R370 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Ushbp1Q8R370 Ldb3-207ENSMUST00000227819 1499 ntBASIC15.52■□□□□ 0.07
Ushbp1Q8R370 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ushbp1Q8R370 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC15.51■□□□□ 0.07
Ushbp1Q8R370 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms