Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 AC114543.1-201ENSMUST00000226451 1558 ntBASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Gm6023-201ENSMUST00000118217 606 ntBASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Gm7029-201ENSMUST00000173226 450 ntBASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Gm43822-201ENSMUST00000200285 476 ntBASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Col6a6Q8C6K9 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 AC133598.1-201ENSMUST00000224327 660 ntBASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col6a6Q8C6K9 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Mir686-201ENSMUST00000102174 109 ntBASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Gm4271-201ENSMUST00000174444 973 ntBASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Gm12846-201ENSMUST00000120431 1373 ntBASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Zkscan3-208ENSMUST00000224820 5398 ntBASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col6a6Q8C6K9 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC12.45□□□□□ -0.42
Col6a6Q8C6K9 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col6a6Q8C6K9 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col6a6Q8C6K9 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col6a6Q8C6K9 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
Col6a6Q8C6K9 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Col6a6Q8C6K9 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col6a6Q8C6K9 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col6a6Q8C6K9 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col6a6Q8C6K9 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms