Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col28a1Q2UY11 Gm13233-201ENSMUST00000118760 1443 ntBASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Gm13244-201ENSMUST00000118855 1446 ntBASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Fgf17-202ENSMUST00000227123 1336 ntBASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Gm25948-201ENSMUST00000175334 112 ntBASIC13.47□□□□□ -0.25
Col28a1Q2UY11 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Gm43474-201ENSMUST00000196415 774 ntBASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col28a1Q2UY11 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Gm5479-201ENSMUST00000160578 435 ntBASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Mir6990-201ENSMUST00000183724 91 ntBASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col28a1Q2UY11 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col28a1Q2UY11 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col28a1Q2UY11 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Col28a1Q2UY11 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col28a1Q2UY11 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms