Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Gm4913-201ENSMUST00000117075 1290 ntBASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Klk2-ps-201ENSMUST00000205342 571 ntBASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ptchd3Q0EEE2 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Gm11025-201ENSMUST00000140773 466 ntBASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 AC131187.1-201ENSMUST00000224567 809 ntBASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 CT030684.1-201ENSMUST00000227292 914 ntBASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Gm37795-201ENSMUST00000194216 2459 ntBASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Gm37133-201ENSMUST00000192705 1922 ntBASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Gm14371-201ENSMUST00000138925 1518 ntBASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Ptchd3Q0EEE2 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Nudt18-203ENSMUST00000228768 1578 ntBASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Gm25911-201ENSMUST00000157621 56 ntBASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Gpr146-202ENSMUST00000053120 1040 ntBASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ptchd3Q0EEE2 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ptchd3Q0EEE2 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Ptchd3Q0EEE2 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ptchd3Q0EEE2 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms