Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Sox9Q04887 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Sox9Q04887 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Sox9Q04887 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Gm5687-201ENSMUST00000118252 640 ntBASIC14.25□□□□□ -0.13
Sox9Q04887 Gm13369-201ENSMUST00000119442 987 ntBASIC14.25□□□□□ -0.13
Sox9Q04887 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC14.25□□□□□ -0.13
Sox9Q04887 Gm16379-201ENSMUST00000161469 348 ntBASIC14.25□□□□□ -0.13
Sox9Q04887 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC14.25□□□□□ -0.13
Sox9Q04887 Gm8762-201ENSMUST00000193486 339 ntBASIC14.25□□□□□ -0.13
Sox9Q04887 Tyms-ps-201ENSMUST00000219550 915 ntBASIC14.25□□□□□ -0.13
Sox9Q04887 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Sox9Q04887 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC14.25□□□□□ -0.13
Sox9Q04887 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Gm8706-201ENSMUST00000197372 1491 ntBASIC14.25□□□□□ -0.13
Sox9Q04887 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sox9Q04887 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Sox9Q04887 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Sox9Q04887 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Sox9Q04887 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC14.24□□□□□ -0.13
Sox9Q04887 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
Sox9Q04887 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Gm37489-201ENSMUST00000191883 159 ntBASIC14.24□□□□□ -0.13
Sox9Q04887 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Sox9Q04887 Gm9445-201ENSMUST00000207454 1285 ntBASIC14.24□□□□□ -0.13
Sox9Q04887 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Sox9Q04887 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Sox9Q04887 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Sox9Q04887 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Sox9Q04887 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sox9Q04887 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC14.23□□□□□ -0.13
Sox9Q04887 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Sox9Q04887 Gm13297-201ENSMUST00000120205 934 ntBASIC14.23□□□□□ -0.13
Sox9Q04887 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC14.23□□□□□ -0.13
Sox9Q04887 Gm24514-201ENSMUST00000174961 285 ntBASIC14.23□□□□□ -0.13
Sox9Q04887 Gm38158-201ENSMUST00000194617 339 ntBASIC14.23□□□□□ -0.13
Sox9Q04887 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC14.23□□□□□ -0.13
Sox9Q04887 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC14.23□□□□□ -0.13
Sox9Q04887 Gm2824-203ENSMUST00000226189 1228 ntBASIC14.23□□□□□ -0.13
Sox9Q04887 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Sox9Q04887 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sox9Q04887 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Sox9Q04887 Carlr-201ENSMUST00000181515 2574 ntBASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms