Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Cux1P53564 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC20.96■□□□□ 0.95
Cux1P53564 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC20.96■□□□□ 0.95
Cux1P53564 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC20.96■□□□□ 0.95
Cux1P53564 Rn7s1-201ENSMUST00000174924 300 ntBASIC20.96■□□□□ 0.95
Cux1P53564 Rn7s2-201ENSMUST00000175032 300 ntBASIC20.96■□□□□ 0.95
Cux1P53564 Gm26461-201ENSMUST00000175064 290 ntBASIC20.96■□□□□ 0.95
Cux1P53564 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC20.96■□□□□ 0.95
Cux1P53564 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
Cux1P53564 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cux1P53564 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cux1P53564 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cux1P53564 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
Cux1P53564 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Cux1P53564 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Cux1P53564 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cux1P53564 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.95
Cux1P53564 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC20.95■□□□□ 0.94
Cux1P53564 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Cux1P53564 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Cux1P53564 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Cux1P53564 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC20.95■□□□□ 0.94
Cux1P53564 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC20.95■□□□□ 0.94
Cux1P53564 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC20.95■□□□□ 0.94
Cux1P53564 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Cux1P53564 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Cux1P53564 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cux1P53564 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Cux1P53564 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC20.94■□□□□ 0.94
Cux1P53564 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Gm15370-201ENSMUST00000117158 253 ntBASIC20.94■□□□□ 0.94
Cux1P53564 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
Cux1P53564 Gm38000-201ENSMUST00000192390 1215 ntBASIC20.94■□□□□ 0.94
Cux1P53564 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC20.94■□□□□ 0.94
Cux1P53564 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC20.94■□□□□ 0.94
Cux1P53564 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Cux1P53564 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Cux1P53564 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC20.94■□□□□ 0.94
Cux1P53564 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Gm24255-201ENSMUST00000104481 128 ntBASIC20.94■□□□□ 0.94
Cux1P53564 Snord83b-201ENSMUST00000104546 94 ntBASIC20.94■□□□□ 0.94
Cux1P53564 Gm4986-201ENSMUST00000119731 549 ntBASIC20.94■□□□□ 0.94
Cux1P53564 Gm13297-201ENSMUST00000120205 934 ntBASIC20.94■□□□□ 0.94
Cux1P53564 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cux1P53564 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC20.94■□□□□ 0.94
Cux1P53564 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Cux1P53564 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
Cux1P53564 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC20.93■□□□□ 0.94
Cux1P53564 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC20.93■□□□□ 0.94
Cux1P53564 Gm24548-201ENSMUST00000158650 108 ntBASIC20.93■□□□□ 0.94
Cux1P53564 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Cux1P53564 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Cux1P53564 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Cux1P53564 Gm7118-201ENSMUST00000200167 1003 ntBASIC20.93■□□□□ 0.94
Cux1P53564 Gm21769-201ENSMUST00000211922 111 ntBASIC20.93■□□□□ 0.94
Cux1P53564 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Cux1P53564 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Cux1P53564 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms