Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Slc6a5-201ENSMUST00000056442 7065 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Hmgb3O54879 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Gm6159-201ENSMUST00000191249 1724 ntBASIC11.47□□□□□ -0.57
Hmgb3O54879 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Hmgb3O54879 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC11.47□□□□□ -0.57
Hmgb3O54879 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC11.47□□□□□ -0.57
Hmgb3O54879 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Hmgb3O54879 Gm13830-205ENSMUST00000201195 1155 ntBASIC11.47□□□□□ -0.57
Hmgb3O54879 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC11.47□□□□□ -0.57
Hmgb3O54879 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC11.47□□□□□ -0.57
Hmgb3O54879 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Hmgb3O54879 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Hmgb3O54879 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
Hmgb3O54879 AC164565.1-201ENSMUST00000217520 1484 ntBASIC11.46□□□□□ -0.57
Hmgb3O54879 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Best4-ps-201ENSMUST00000129783 1380 ntBASIC11.46□□□□□ -0.57
Hmgb3O54879 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC11.46□□□□□ -0.57
Hmgb3O54879 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Gm6089-201ENSMUST00000197666 938 ntBASIC11.46□□□□□ -0.57
Hmgb3O54879 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Gm45167-201ENSMUST00000208007 322 ntBASIC11.46□□□□□ -0.57
Hmgb3O54879 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Hmgb3O54879 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC11.46□□□□□ -0.57
Hmgb3O54879 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
Hmgb3O54879 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hmgb3O54879 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hmgb3O54879 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hmgb3O54879 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
Hmgb3O54879 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC11.46□□□□□ -0.58
Hmgb3O54879 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hmgb3O54879 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hmgb3O54879 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
Hmgb3O54879 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Hmgb3O54879 Taf3-204ENSMUST00000114909 4897 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Hmgb3O54879 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Hmgb3O54879 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Hmgb3O54879 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Hmgb3O54879 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Hmgb3O54879 Tgoln1-201ENSMUST00000070524 5013 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Hmgb3O54879 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 70.8 ms