Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msh4Q99MT2 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msh4Q99MT2 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msh4Q99MT2 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Msh4Q99MT2 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Gm27680-201ENSMUST00000184192 160 ntBASIC13.55□□□□□ -0.24
Msh4Q99MT2 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Gm45453-201ENSMUST00000211758 853 ntBASIC13.55□□□□□ -0.24
Msh4Q99MT2 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Dupd1-202ENSMUST00000224735 548 ntBASIC13.55□□□□□ -0.24
Msh4Q99MT2 Shd-206ENSMUST00000225145 998 ntBASIC13.55□□□□□ -0.24
Msh4Q99MT2 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 CT030684.3-201ENSMUST00000227308 2445 ntBASIC13.55□□□□□ -0.24
Msh4Q99MT2 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Msh4Q99MT2 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC13.54□□□□□ -0.24
Msh4Q99MT2 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Mir1897-201ENSMUST00000122581 272 ntBASIC13.54□□□□□ -0.24
Msh4Q99MT2 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Gm10275-202ENSMUST00000168697 495 ntBASIC13.54□□□□□ -0.24
Msh4Q99MT2 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Msh4Q99MT2 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Gm16476-201ENSMUST00000221544 139 ntBASIC13.54□□□□□ -0.24
Msh4Q99MT2 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Gm10275-201ENSMUST00000092620 635 ntBASIC13.54□□□□□ -0.24
Msh4Q99MT2 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC13.54□□□□□ -0.24
Msh4Q99MT2 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Msh4Q99MT2 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Msh4Q99MT2 Gm27989-201ENSMUST00000184721 107 ntBASIC13.53□□□□□ -0.24
Msh4Q99MT2 Gm9063-201ENSMUST00000223299 582 ntBASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms