Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Gm12341-201ENSMUST00000119724 503 ntBASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Gm11424-201ENSMUST00000121929 829 ntBASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Gm18018-201ENSMUST00000198273 408 ntBASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Gm9794-201ENSMUST00000202370 423 ntBASIC15.38■□□□□ 0.05
Trim47Q8C0E3 AC154239.3-201ENSMUST00000226933 674 ntBASIC15.38■□□□□ 0.05
Trim47Q8C0E3 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trim47Q8C0E3 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Gm45760-201ENSMUST00000212190 1782 ntBASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Gm9908-201ENSMUST00000211534 448 ntBASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Gm19220-201ENSMUST00000222682 803 ntBASIC15.37■□□□□ 0.05
Trim47Q8C0E3 AC154532.1-201ENSMUST00000227860 965 ntBASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trim47Q8C0E3 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Gm12490-201ENSMUST00000120255 560 ntBASIC15.36■□□□□ 0.05
Trim47Q8C0E3 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Gm6745-201ENSMUST00000199216 526 ntBASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 AC140375.2-201ENSMUST00000225283 584 ntBASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Gm8337-201ENSMUST00000187358 1938 ntBASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trim47Q8C0E3 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trim47Q8C0E3 Gm12138-201ENSMUST00000122180 951 ntBASIC15.35■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms