Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Gm6180-201ENSMUST00000065243 498 ntBASIC16.35■□□□□ 0.21
Trim56Q80VI1 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Gm20632-201ENSMUST00000176760 2427 ntBASIC16.35■□□□□ 0.21
Trim56Q80VI1 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Gm19078-201ENSMUST00000206311 727 ntBASIC16.34■□□□□ 0.21
Trim56Q80VI1 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Gm5639-201ENSMUST00000122305 2403 ntBASIC16.34■□□□□ 0.21
Trim56Q80VI1 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trim56Q80VI1 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim56Q80VI1 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim56Q80VI1 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim56Q80VI1 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim56Q80VI1 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.21
Trim56Q80VI1 Gm42872-201ENSMUST00000200026 1967 ntBASIC16.33■□□□□ 0.21
Trim56Q80VI1 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim56Q80VI1 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
Trim56Q80VI1 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Trim56Q80VI1 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Trim56Q80VI1 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
Trim56Q80VI1 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Gm23984-201ENSMUST00000157139 203 ntBASIC16.33■□□□□ 0.2
Trim56Q80VI1 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Gm15823-201ENSMUST00000064305 670 ntBASIC16.33■□□□□ 0.2
Trim56Q80VI1 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC16.33■□□□□ 0.2
Trim56Q80VI1 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
Trim56Q80VI1 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Trim56Q80VI1 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Gm15678-201ENSMUST00000117573 960 ntBASIC16.32■□□□□ 0.2
Trim56Q80VI1 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Gm26464-201ENSMUST00000157094 305 ntBASIC16.32■□□□□ 0.2
Trim56Q80VI1 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Gm18934-201ENSMUST00000216671 1044 ntBASIC16.32■□□□□ 0.2
Trim56Q80VI1 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Gm19220-201ENSMUST00000222682 803 ntBASIC16.32■□□□□ 0.2
Trim56Q80VI1 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim56Q80VI1 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms