Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 AC164567.1-201ENSMUST00000219185 960 ntBASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Rnf220Q6PDX6 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
Rnf220Q6PDX6 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Gm21362-201ENSMUST00000194272 928 ntBASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 CT010506.4-201ENSMUST00000225457 351 ntBASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Rnf220Q6PDX6 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Duox1-201ENSMUST00000099461 5267 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Gm9103-201ENSMUST00000119371 405 ntBASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Gm6376-201ENSMUST00000209407 580 ntBASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Gm45706-201ENSMUST00000213063 2136 ntBASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Rnf220Q6PDX6 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms