Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC15.33■□□□□ 0.04
Col6a1Q04857 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Col6a1Q04857 AC167013.2-201ENSMUST00000228520 2684 ntBASIC15.32■□□□□ 0.04
Col6a1Q04857 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
Col6a1Q04857 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC15.32■□□□□ 0.04
Col6a1Q04857 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC15.32■□□□□ 0.04
Col6a1Q04857 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC15.32■□□□□ 0.04
Col6a1Q04857 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC15.32■□□□□ 0.04
Col6a1Q04857 Gm19078-201ENSMUST00000206311 727 ntBASIC15.32■□□□□ 0.04
Col6a1Q04857 Gm18056-201ENSMUST00000207670 568 ntBASIC15.32■□□□□ 0.04
Col6a1Q04857 Gm18061-201ENSMUST00000208350 562 ntBASIC15.32■□□□□ 0.04
Col6a1Q04857 Gm18063-201ENSMUST00000208529 568 ntBASIC15.32■□□□□ 0.04
Col6a1Q04857 Gm18052-201ENSMUST00000208750 559 ntBASIC15.32■□□□□ 0.04
Col6a1Q04857 Gm17383-201ENSMUST00000078739 1041 ntBASIC15.32■□□□□ 0.04
Col6a1Q04857 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC15.32■□□□□ 0.04
Col6a1Q04857 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC15.32■□□□□ 0.04
Col6a1Q04857 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Col6a1Q04857 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
Col6a1Q04857 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Col6a1Q04857 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC15.31■□□□□ 0.04
Col6a1Q04857 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Rn7s1-201ENSMUST00000174924 300 ntBASIC15.31■□□□□ 0.04
Col6a1Q04857 Rn7s2-201ENSMUST00000175032 300 ntBASIC15.31■□□□□ 0.04
Col6a1Q04857 Gm26461-201ENSMUST00000175064 290 ntBASIC15.31■□□□□ 0.04
Col6a1Q04857 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Col6a1Q04857 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC15.31■□□□□ 0.04
Col6a1Q04857 Gm40466-201ENSMUST00000212174 422 ntBASIC15.31■□□□□ 0.04
Col6a1Q04857 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Col6a1Q04857 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Col6a1Q04857 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Gm13050-201ENSMUST00000122149 1345 ntBASIC15.3■□□□□ 0.04
Col6a1Q04857 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC15.3■□□□□ 0.04
Col6a1Q04857 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC15.3■□□□□ 0.04
Col6a1Q04857 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Col6a1Q04857 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC15.3■□□□□ 0.04
Col6a1Q04857 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC15.3■□□□□ 0.04
Col6a1Q04857 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Gm4857-201ENSMUST00000192718 785 ntBASIC15.3■□□□□ 0.04
Col6a1Q04857 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
Col6a1Q04857 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC15.3■□□□□ 0.04
Col6a1Q04857 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC15.3■□□□□ 0.04
Col6a1Q04857 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC15.3■□□□□ 0.04
Col6a1Q04857 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Col6a1Q04857 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC15.3■□□□□ 0.04
Col6a1Q04857 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Col6a1Q04857 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
Col6a1Q04857 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
Col6a1Q04857 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col6a1Q04857 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col6a1Q04857 Gm43205-201ENSMUST00000198622 1968 ntBASIC15.29■□□□□ 0.04
Col6a1Q04857 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col6a1Q04857 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms