Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn1bP97952 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn1bP97952 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn1bP97952 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn1bP97952 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn1bP97952 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn1bP97952 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Scn1bP97952 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn1bP97952 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC12.69□□□□□ -0.38
Scn1bP97952 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn1bP97952 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Scn1bP97952 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.69□□□□□ -0.38
Scn1bP97952 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Scn1bP97952 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Scn1bP97952 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Gm42480-201ENSMUST00000198434 2595 ntBASIC12.68□□□□□ -0.38
Scn1bP97952 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Scn1bP97952 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
Scn1bP97952 Gm7222-201ENSMUST00000117512 906 ntBASIC12.68□□□□□ -0.38
Scn1bP97952 Gm15593-201ENSMUST00000122085 1008 ntBASIC12.68□□□□□ -0.38
Scn1bP97952 Gm18489-201ENSMUST00000172565 551 ntBASIC12.68□□□□□ -0.38
Scn1bP97952 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Scn1bP97952 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC12.68□□□□□ -0.38
Scn1bP97952 Gm7787-201ENSMUST00000216858 688 ntBASIC12.68□□□□□ -0.38
Scn1bP97952 AC102291.3-201ENSMUST00000226566 405 ntBASIC12.68□□□□□ -0.38
Scn1bP97952 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Rps4l-201ENSMUST00000071745 943 ntBASIC12.68□□□□□ -0.38
Scn1bP97952 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC12.68□□□□□ -0.38
Scn1bP97952 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Scn1bP97952 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Scn1bP97952 Gm5184-201ENSMUST00000220417 1702 ntBASIC12.68□□□□□ -0.38
Scn1bP97952 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Scn1bP97952 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC12.67□□□□□ -0.38
Scn1bP97952 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC12.67□□□□□ -0.38
Scn1bP97952 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Scn1bP97952 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC12.67□□□□□ -0.38
Scn1bP97952 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Scn1bP97952 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Scn1bP97952 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC12.67□□□□□ -0.38
Scn1bP97952 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC12.67□□□□□ -0.38
Scn1bP97952 Gm9682-201ENSMUST00000197505 556 ntBASIC12.67□□□□□ -0.38
Scn1bP97952 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC12.67□□□□□ -0.38
Scn1bP97952 Gm5864-201ENSMUST00000202263 970 ntBASIC12.67□□□□□ -0.38
Scn1bP97952 Umpk-ps-201ENSMUST00000211897 827 ntBASIC12.67□□□□□ -0.38
Scn1bP97952 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Scn1bP97952 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Scn1bP97952 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Scn1bP97952 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Scn1bP97952 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Scn1bP97952 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Scn1bP97952 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Scn1bP97952 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Scn1bP97952 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Scn1bP97952 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Scn1bP97952 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Scn1bP97952 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Scn1bP97952 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Scn1bP97952 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Scn1bP97952 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Scn1bP97952 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Scn1bP97952 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Scn1bP97952 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC12.66□□□□□ -0.38
Scn1bP97952 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Scn1bP97952 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms