Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Gm12742-201ENSMUST00000117326 410 ntBASIC11.98□□□□□ -0.49
Nkx3-1P97436 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC11.98□□□□□ -0.49
Nkx3-1P97436 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC11.98□□□□□ -0.49
Nkx3-1P97436 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Gm4081-201ENSMUST00000195287 1838 ntBASIC11.97□□□□□ -0.49
Nkx3-1P97436 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Gm12928-201ENSMUST00000117115 573 ntBASIC11.97□□□□□ -0.49
Nkx3-1P97436 Gm12416-201ENSMUST00000120911 1008 ntBASIC11.97□□□□□ -0.49
Nkx3-1P97436 Gm15376-201ENSMUST00000122258 783 ntBASIC11.97□□□□□ -0.49
Nkx3-1P97436 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Nkx3-1P97436 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Gm8463-201ENSMUST00000208573 613 ntBASIC11.97□□□□□ -0.49
Nkx3-1P97436 AC110817.1-201ENSMUST00000225706 605 ntBASIC11.97□□□□□ -0.49
Nkx3-1P97436 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC11.97□□□□□ -0.49
Nkx3-1P97436 AC148324.1-201ENSMUST00000219034 4240 ntBASIC11.97□□□□□ -0.49
Nkx3-1P97436 Gm42471-201ENSMUST00000201457 1865 ntBASIC11.97□□□□□ -0.49
Nkx3-1P97436 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 AL645783.1-201ENSMUST00000221416 1832 ntBASIC11.97□□□□□ -0.49
Nkx3-1P97436 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Nkx3-1P97436 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Gm8775-201ENSMUST00000170943 1327 ntBASIC11.96□□□□□ -0.49
Nkx3-1P97436 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Gm27772-201ENSMUST00000184900 187 ntBASIC11.96□□□□□ -0.49
Nkx3-1P97436 Gm5069-202ENSMUST00000192714 1011 ntBASIC11.96□□□□□ -0.49
Nkx3-1P97436 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Gm45841-201ENSMUST00000207700 164 ntBASIC11.96□□□□□ -0.49
Nkx3-1P97436 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Nkx3-1P97436 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms