Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 CT009713.10-202ENSMUST00000225734 696 ntBASIC13.14□□□□□ -0.31
Cdx2P43241 Itm2b-204ENSMUST00000228637 783 ntBASIC13.14□□□□□ -0.31
Cdx2P43241 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC13.14□□□□□ -0.31
Cdx2P43241 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Cdx2P43241 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Cdx2P43241 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cdx2P43241 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Cdx2P43241 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC13.13□□□□□ -0.31
Cdx2P43241 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Gm5687-201ENSMUST00000118252 640 ntBASIC13.13□□□□□ -0.31
Cdx2P43241 Gm14723-201ENSMUST00000118686 215 ntBASIC13.13□□□□□ -0.31
Cdx2P43241 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC13.13□□□□□ -0.31
Cdx2P43241 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC13.13□□□□□ -0.31
Cdx2P43241 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Gm17383-201ENSMUST00000078739 1041 ntBASIC13.13□□□□□ -0.31
Cdx2P43241 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Cdx2P43241 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC13.13□□□□□ -0.31
Cdx2P43241 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC13.13□□□□□ -0.31
Cdx2P43241 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdx2P43241 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC13.12□□□□□ -0.31
Cdx2P43241 Gm38058-201ENSMUST00000194323 4368 ntBASIC13.12□□□□□ -0.31
Cdx2P43241 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC13.12□□□□□ -0.31
Cdx2P43241 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC13.12□□□□□ -0.31
Cdx2P43241 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC13.12□□□□□ -0.31
Cdx2P43241 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC13.12□□□□□ -0.31
Cdx2P43241 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Cdx2P43241 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC13.12□□□□□ -0.31
Cdx2P43241 AC073947.2-201ENSMUST00000215888 1130 ntBASIC13.12□□□□□ -0.31
Cdx2P43241 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Cdx2P43241 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC13.12□□□□□ -0.31
Cdx2P43241 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC13.12□□□□□ -0.31
Cdx2P43241 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC13.12□□□□□ -0.31
Cdx2P43241 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdx2P43241 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx2P43241 Gm37411-201ENSMUST00000194180 2282 ntBASIC13.11□□□□□ -0.31
Cdx2P43241 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx2P43241 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC13.11□□□□□ -0.31
Cdx2P43241 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx2P43241 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx2P43241 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx2P43241 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx2P43241 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC13.11□□□□□ -0.31
Cdx2P43241 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC13.11□□□□□ -0.31
Cdx2P43241 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx2P43241 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx2P43241 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx2P43241 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx2P43241 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cdx2P43241 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC13.11□□□□□ -0.31
Cdx2P43241 Gm27682-201ENSMUST00000183930 110 ntBASIC13.11□□□□□ -0.31
Cdx2P43241 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC13.11□□□□□ -0.31
Cdx2P43241 Gm38002-201ENSMUST00000193255 180 ntBASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 67.8 ms