Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ube4aE9Q735 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Ube4aE9Q735 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ube4aE9Q735 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ube4aE9Q735 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ube4aE9Q735 Gm9755-201ENSMUST00000032981 1356 ntBASIC16.6■□□□□ 0.25
Ube4aE9Q735 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC16.6■□□□□ 0.25
Ube4aE9Q735 Gm7553-201ENSMUST00000185805 1426 ntBASIC16.6■□□□□ 0.25
Ube4aE9Q735 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ube4aE9Q735 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ube4aE9Q735 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ube4aE9Q735 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Gm16177-201ENSMUST00000120728 718 ntBASIC16.59■□□□□ 0.25
Ube4aE9Q735 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Rn7sk-201ENSMUST00000083103 331 ntBASIC16.59■□□□□ 0.25
Ube4aE9Q735 Gm26315-201ENSMUST00000083890 321 ntBASIC16.59■□□□□ 0.25
Ube4aE9Q735 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ube4aE9Q735 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Ube4aE9Q735 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Ube4aE9Q735 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Gm40466-201ENSMUST00000212174 422 ntBASIC16.58■□□□□ 0.24
Ube4aE9Q735 AC155237.1-201ENSMUST00000226196 1279 ntBASIC16.58■□□□□ 0.24
Ube4aE9Q735 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Ube4aE9Q735 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Gm13886-201ENSMUST00000117876 1183 ntBASIC16.57■□□□□ 0.24
Ube4aE9Q735 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Gm27331-201ENSMUST00000183705 60 ntBASIC16.57■□□□□ 0.24
Ube4aE9Q735 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Gm10478-201ENSMUST00000084451 396 ntBASIC16.57■□□□□ 0.24
Ube4aE9Q735 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ube4aE9Q735 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ube4aE9Q735 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ube4aE9Q735 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms