Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC13.57□□□□□ -0.24
Chd3B1AR17 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Chd3B1AR17 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Chd3B1AR17 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC13.57□□□□□ -0.24
Chd3B1AR17 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC13.57□□□□□ -0.24
Chd3B1AR17 Gm10012-201ENSMUST00000078252 192 ntBASIC13.57□□□□□ -0.24
Chd3B1AR17 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Chd3B1AR17 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Chd3B1AR17 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Chd3B1AR17 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Chd3B1AR17 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC13.56□□□□□ -0.24
Chd3B1AR17 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Gm6152-201ENSMUST00000151704 340 ntBASIC13.56□□□□□ -0.24
Chd3B1AR17 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC13.56□□□□□ -0.24
Chd3B1AR17 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC13.56□□□□□ -0.24
Chd3B1AR17 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 AC155286.1-201ENSMUST00000218632 448 ntBASIC13.56□□□□□ -0.24
Chd3B1AR17 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Chd3B1AR17 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Chd3B1AR17 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC13.56□□□□□ -0.24
Chd3B1AR17 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
Chd3B1AR17 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Chd3B1AR17 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC13.55□□□□□ -0.24
Chd3B1AR17 Gm12416-201ENSMUST00000120911 1008 ntBASIC13.55□□□□□ -0.24
Chd3B1AR17 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC13.55□□□□□ -0.24
Chd3B1AR17 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Gm6266-201ENSMUST00000203844 806 ntBASIC13.55□□□□□ -0.24
Chd3B1AR17 AC149294.4-201ENSMUST00000227870 882 ntBASIC13.55□□□□□ -0.24
Chd3B1AR17 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Chd3B1AR17 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC13.55□□□□□ -0.24
Chd3B1AR17 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Chd3B1AR17 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
Chd3B1AR17 Gm6244-201ENSMUST00000178732 841 ntBASIC13.55□□□□□ -0.24
Chd3B1AR17 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC13.55□□□□□ -0.24
Chd3B1AR17 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC13.55□□□□□ -0.24
Chd3B1AR17 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
Chd3B1AR17 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Chd3B1AR17 Gm12537-201ENSMUST00000119266 1002 ntBASIC13.54□□□□□ -0.24
Chd3B1AR17 Gm12070-201ENSMUST00000119551 1002 ntBASIC13.54□□□□□ -0.24
Chd3B1AR17 Gm12671-201ENSMUST00000119978 1002 ntBASIC13.54□□□□□ -0.24
Chd3B1AR17 Gm13292-201ENSMUST00000120014 1000 ntBASIC13.54□□□□□ -0.24
Chd3B1AR17 Gm12403-201ENSMUST00000121384 959 ntBASIC13.54□□□□□ -0.24
Chd3B1AR17 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC13.54□□□□□ -0.24
Chd3B1AR17 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC13.54□□□□□ -0.24
Chd3B1AR17 Gm10359-201ENSMUST00000180167 1002 ntBASIC13.54□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms