Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Gm5712-201ENSMUST00000199748 1043 ntBASIC13.75□□□□□ -0.21
Lima1Q9ERG0 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Lima1Q9ERG0 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 H2af-ps-201ENSMUST00000119066 295 ntBASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Gm5479-201ENSMUST00000160578 435 ntBASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Gm45612-201ENSMUST00000211320 160 ntBASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Gpr146-202ENSMUST00000053120 1040 ntBASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Gm20632-201ENSMUST00000176760 2427 ntBASIC13.74□□□□□ -0.21
Lima1Q9ERG0 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 AC115735.4-201ENSMUST00000227460 1944 ntBASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC13.74□□□□□ -0.21
Lima1Q9ERG0 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Gm6973-201ENSMUST00000117080 721 ntBASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Gm45098-201ENSMUST00000207179 657 ntBASIC13.73□□□□□ -0.21
Lima1Q9ERG0 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Lima1Q9ERG0 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lima1Q9ERG0 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Lima1Q9ERG0 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Lima1Q9ERG0 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms