Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trim56Q80VI1 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Gm10710-201ENSMUST00000047876 3971 ntBASIC16.38■□□□□ 0.21
Trim56Q80VI1 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC16.38■□□□□ 0.21
Trim56Q80VI1 Gm14928-201ENSMUST00000120198 477 ntBASIC16.38■□□□□ 0.21
Trim56Q80VI1 Gm15376-201ENSMUST00000122258 783 ntBASIC16.38■□□□□ 0.21
Trim56Q80VI1 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Gm5354-201ENSMUST00000182417 973 ntBASIC16.38■□□□□ 0.21
Trim56Q80VI1 Gm37917-201ENSMUST00000194711 392 ntBASIC16.38■□□□□ 0.21
Trim56Q80VI1 Gm43094-201ENSMUST00000196549 921 ntBASIC16.38■□□□□ 0.21
Trim56Q80VI1 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 AC161252.3-201ENSMUST00000225465 1549 ntBASIC16.38■□□□□ 0.21
Trim56Q80VI1 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trim56Q80VI1 Gm13859-201ENSMUST00000119936 1423 ntBASIC16.37■□□□□ 0.21
Trim56Q80VI1 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Gm37015-201ENSMUST00000192763 1521 ntBASIC16.37■□□□□ 0.21
Trim56Q80VI1 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC16.37■□□□□ 0.21
Trim56Q80VI1 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC16.37■□□□□ 0.21
Trim56Q80VI1 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Gm18624-201ENSMUST00000220966 658 ntBASIC16.37■□□□□ 0.21
Trim56Q80VI1 AC238811.3-201ENSMUST00000225422 709 ntBASIC16.37■□□□□ 0.21
Trim56Q80VI1 Gm37912-201ENSMUST00000191895 3076 ntBASIC16.37■□□□□ 0.21
Trim56Q80VI1 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trim56Q80VI1 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Gm12341-201ENSMUST00000119724 503 ntBASIC16.36■□□□□ 0.21
Trim56Q80VI1 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Trim56Q80VI1 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Gm45668-201ENSMUST00000211271 493 ntBASIC16.36■□□□□ 0.21
Trim56Q80VI1 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trim56Q80VI1 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Trim56Q80VI1 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms