Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Nkx3-1P97436 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC12□□□□□ -0.49
Nkx3-1P97436 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC12□□□□□ -0.49
Nkx3-1P97436 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.49
Nkx3-1P97436 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
Nkx3-1P97436 Gm15429-201ENSMUST00000151268 798 ntBASIC12□□□□□ -0.49
Nkx3-1P97436 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC12□□□□□ -0.49
Nkx3-1P97436 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC12□□□□□ -0.49
Nkx3-1P97436 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12□□□□□ -0.49
Nkx3-1P97436 Ighv1-51-201ENSMUST00000192903 354 ntBASIC12□□□□□ -0.49
Nkx3-1P97436 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC12□□□□□ -0.49
Nkx3-1P97436 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC12□□□□□ -0.49
Nkx3-1P97436 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 AC166349.1-201ENSMUST00000220866 695 ntBASIC12□□□□□ -0.49
Nkx3-1P97436 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC12□□□□□ -0.49
Nkx3-1P97436 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Nkx3-1P97436 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC12□□□□□ -0.49
Nkx3-1P97436 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC12□□□□□ -0.49
Nkx3-1P97436 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Nkx3-1P97436 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Gm12390-201ENSMUST00000117897 397 ntBASIC11.99□□□□□ -0.49
Nkx3-1P97436 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Gm8835-201ENSMUST00000173096 1169 ntBASIC11.99□□□□□ -0.49
Nkx3-1P97436 Gm24420-201ENSMUST00000176676 59 ntBASIC11.99□□□□□ -0.49
Nkx3-1P97436 Gm27486-201ENSMUST00000184923 80 ntBASIC11.99□□□□□ -0.49
Nkx3-1P97436 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Gm2495-201ENSMUST00000191160 466 ntBASIC11.99□□□□□ -0.49
Nkx3-1P97436 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC11.99□□□□□ -0.49
Nkx3-1P97436 AC125117.1-201ENSMUST00000228121 468 ntBASIC11.99□□□□□ -0.49
Nkx3-1P97436 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Nkx3-1P97436 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Nkx3-1P97436 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Nkx3-1P97436 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC11.98□□□□□ -0.49
Nkx3-1P97436 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms