Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Gm12859-201ENSMUST00000117834 427 ntBASIC16.23■□□□□ 0.19
Vps53Q8CCB4 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Gm18187-201ENSMUST00000196476 984 ntBASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Shd-206ENSMUST00000225145 998 ntBASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Vps53Q8CCB4 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 AC238811.1-201ENSMUST00000225302 441 ntBASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Gm5320-201ENSMUST00000207163 1519 ntBASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Vps53Q8CCB4 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Gm14928-201ENSMUST00000120198 477 ntBASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 AL593843.1-201ENSMUST00000195891 145 ntBASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Gm6218-201ENSMUST00000219812 628 ntBASIC16.21■□□□□ 0.19
Vps53Q8CCB4 AC154239.3-201ENSMUST00000226933 674 ntBASIC16.21■□□□□ 0.19
Vps53Q8CCB4 AC132467.2-202ENSMUST00000227726 559 ntBASIC16.21■□□□□ 0.19
Vps53Q8CCB4 AC123645.1-201ENSMUST00000228469 605 ntBASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Vps53Q8CCB4 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Vps53Q8CCB4 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
Vps53Q8CCB4 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Vps53Q8CCB4 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Ssr1-204ENSMUST00000225319 1610 ntBASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vps53Q8CCB4 Gm37411-201ENSMUST00000194180 2282 ntBASIC16.2■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms