Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Ldha-ps-201ENSMUST00000119390 995 ntBASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Gm5745-201ENSMUST00000183748 313 ntBASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Gm43438-201ENSMUST00000198133 379 ntBASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Trim47Q8C0E3 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Sorbs3-204ENSMUST00000227929 2460 ntBASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Gm37917-201ENSMUST00000194711 392 ntBASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Gm18905-201ENSMUST00000205454 928 ntBASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Gm5425-201ENSMUST00000214125 459 ntBASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Arhgef33-209ENSMUST00000225223 714 ntBASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Gm38037-201ENSMUST00000192600 1624 ntBASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Trim47Q8C0E3 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Gm23984-201ENSMUST00000157139 203 ntBASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Mir6392-201ENSMUST00000184924 108 ntBASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Gm45668-201ENSMUST00000211271 493 ntBASIC15.42■□□□□ 0.06
Trim47Q8C0E3 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trim47Q8C0E3 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms