Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC17.98■□□□□ 0.47
Trim28Q62318 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Rn7sk-201ENSMUST00000083103 331 ntBASIC17.98■□□□□ 0.47
Trim28Q62318 Gm26315-201ENSMUST00000083890 321 ntBASIC17.98■□□□□ 0.47
Trim28Q62318 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 AC139350.1-201ENSMUST00000227064 1594 ntBASIC17.98■□□□□ 0.47
Trim28Q62318 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Trim28Q62318 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC17.98■□□□□ 0.47
Trim28Q62318 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim28Q62318 Gm13050-201ENSMUST00000122149 1345 ntBASIC17.98■□□□□ 0.47
Trim28Q62318 AC167013.2-201ENSMUST00000228520 2684 ntBASIC17.97■□□□□ 0.47
Trim28Q62318 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim28Q62318 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC17.97■□□□□ 0.47
Trim28Q62318 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC17.97■□□□□ 0.47
Trim28Q62318 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC17.97■□□□□ 0.47
Trim28Q62318 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC17.97■□□□□ 0.47
Trim28Q62318 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Trim28Q62318 Gm8835-201ENSMUST00000173096 1169 ntBASIC17.97■□□□□ 0.47
Trim28Q62318 Gm42442-201ENSMUST00000197951 1133 ntBASIC17.97■□□□□ 0.47
Trim28Q62318 Gm42929-201ENSMUST00000198374 1286 ntBASIC17.97■□□□□ 0.47
Trim28Q62318 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC17.97■□□□□ 0.47
Trim28Q62318 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC17.97■□□□□ 0.47
Trim28Q62318 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC17.97■□□□□ 0.47
Trim28Q62318 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim28Q62318 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trim28Q62318 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim28Q62318 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim28Q62318 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
Trim28Q62318 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC17.96■□□□□ 0.47
Trim28Q62318 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Gm13226-201ENSMUST00000117838 404 ntBASIC17.96■□□□□ 0.47
Trim28Q62318 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC17.96■□□□□ 0.47
Trim28Q62318 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC17.96■□□□□ 0.47
Trim28Q62318 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Trim28Q62318 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC17.96■□□□□ 0.47
Trim28Q62318 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Gm3695-201ENSMUST00000087222 1009 ntBASIC17.96■□□□□ 0.47
Trim28Q62318 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Trim28Q62318 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC17.96■□□□□ 0.47
Trim28Q62318 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trim28Q62318 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.96■□□□□ 0.47
Trim28Q62318 AC131068.2-201ENSMUST00000226175 1453 ntBASIC17.95■□□□□ 0.46
Trim28Q62318 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC17.95■□□□□ 0.46
Trim28Q62318 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC17.95■□□□□ 0.46
Trim28Q62318 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC17.95■□□□□ 0.46
Trim28Q62318 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC17.95■□□□□ 0.46
Trim28Q62318 AY702102-202ENSMUST00000194651 1173 ntBASIC17.95■□□□□ 0.46
Trim28Q62318 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Trim28Q62318 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Trim28Q62318 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trim28Q62318 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim28Q62318 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
Trim28Q62318 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim28Q62318 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC17.94■□□□□ 0.46
Trim28Q62318 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim28Q62318 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim28Q62318 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC17.94■□□□□ 0.46
Trim28Q62318 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trim28Q62318 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC17.94■□□□□ 0.46
Trim28Q62318 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC17.94■□□□□ 0.46
Trim28Q62318 Itm2b-204ENSMUST00000228637 783 ntBASIC17.94■□□□□ 0.46
Trim28Q62318 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trim28Q62318 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 56.1 ms