Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Gm10461-201ENSMUST00000202073 4786 ntBASIC15.29■□□□□ 0.04
Col11a1Q61245 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC15.29■□□□□ 0.04
Col11a1Q61245 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC15.29■□□□□ 0.04
Col11a1Q61245 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Col11a1Q61245 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col11a1Q61245 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 AC096628.2-201ENSMUST00000225443 1413 ntBASIC15.28■□□□□ 0.04
Col11a1Q61245 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC15.28■□□□□ 0.04
Col11a1Q61245 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC15.28■□□□□ 0.04
Col11a1Q61245 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 CT010478.1-201ENSMUST00000220747 2787 ntBASIC15.28■□□□□ 0.04
Col11a1Q61245 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC15.28■□□□□ 0.04
Col11a1Q61245 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 Gm5869-201ENSMUST00000200248 1257 ntBASIC15.28■□□□□ 0.04
Col11a1Q61245 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC15.28■□□□□ 0.04
Col11a1Q61245 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC15.28■□□□□ 0.04
Col11a1Q61245 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 Gm10702-201ENSMUST00000098929 1268 ntBASIC15.28■□□□□ 0.04
Col11a1Q61245 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Col11a1Q61245 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
Col11a1Q61245 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Col11a1Q61245 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC15.28■□□□□ 0.04
Col11a1Q61245 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Col11a1Q61245 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col11a1Q61245 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 Gm15897-201ENSMUST00000117770 1486 ntBASIC15.27■□□□□ 0.04
Col11a1Q61245 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 Gm4909-201ENSMUST00000118749 794 ntBASIC15.27■□□□□ 0.04
Col11a1Q61245 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Col11a1Q61245 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col11a1Q61245 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Col11a1Q61245 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Col11a1Q61245 Gm8862-201ENSMUST00000198379 1346 ntBASIC15.27■□□□□ 0.03
Col11a1Q61245 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col11a1Q61245 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC15.27■□□□□ 0.03
Col11a1Q61245 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col11a1Q61245 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col11a1Q61245 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col11a1Q61245 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col11a1Q61245 Gm14263-201ENSMUST00000117955 746 ntBASIC15.27■□□□□ 0.03
Col11a1Q61245 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col11a1Q61245 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
Col11a1Q61245 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col11a1Q61245 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col11a1Q61245 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC15.27■□□□□ 0.03
Col11a1Q61245 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC15.27■□□□□ 0.03
Col11a1Q61245 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Col11a1Q61245 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC15.26■□□□□ 0.03
Col11a1Q61245 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Gm8805-201ENSMUST00000117848 313 ntBASIC15.26■□□□□ 0.03
Col11a1Q61245 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col11a1Q61245 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col11a1Q61245 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Col11a1Q61245 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC15.26■□□□□ 0.03
Col11a1Q61245 AC122305.4-201ENSMUST00000216159 1206 ntBASIC15.26■□□□□ 0.03
Col11a1Q61245 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC15.26■□□□□ 0.03
Col11a1Q61245 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
Col11a1Q61245 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Col11a1Q61245 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col11a1Q61245 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Col11a1Q61245 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms