Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Upf3bQ3ULL6 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Gm6283-201ENSMUST00000182369 1000 ntBASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Gm10576-201ENSMUST00000191927 825 ntBASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Gm7390-201ENSMUST00000212452 1216 ntBASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Upf3bQ3ULL6 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Gm4804-201ENSMUST00000182234 999 ntBASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 AC238811.1-201ENSMUST00000225302 441 ntBASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Gm12020-201ENSMUST00000119030 2042 ntBASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Upf3bQ3ULL6 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 AC149294.4-201ENSMUST00000227870 882 ntBASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC14.9□□□□□ -0.02
Upf3bQ3ULL6 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms