Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Limch1Q3UH68 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Limch1Q3UH68 Gm43438-201ENSMUST00000198133 379 ntBASIC16.42■□□□□ 0.22
Limch1Q3UH68 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Limch1Q3UH68 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Limch1Q3UH68 Gm15889-202ENSMUST00000212669 2443 ntBASIC16.42■□□□□ 0.22
Limch1Q3UH68 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Limch1Q3UH68 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Limch1Q3UH68 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Limch1Q3UH68 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Limch1Q3UH68 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Limch1Q3UH68 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Limch1Q3UH68 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Limch1Q3UH68 Gm3365-201ENSMUST00000216296 1480 ntBASIC16.42■□□□□ 0.22
Limch1Q3UH68 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Gm24543-201ENSMUST00000103867 82 ntBASIC16.41■□□□□ 0.22
Limch1Q3UH68 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Gm27631-201ENSMUST00000184163 466 ntBASIC16.41■□□□□ 0.22
Limch1Q3UH68 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Limch1Q3UH68 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Limch1Q3UH68 AC090659.2-201ENSMUST00000225378 1186 ntBASIC16.41■□□□□ 0.22
Limch1Q3UH68 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Limch1Q3UH68 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Gm45751-201ENSMUST00000210185 1573 ntBASIC16.4■□□□□ 0.22
Limch1Q3UH68 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC16.4■□□□□ 0.22
Limch1Q3UH68 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Ighv8-14-201ENSMUST00000196781 358 ntBASIC16.4■□□□□ 0.22
Limch1Q3UH68 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC16.4■□□□□ 0.22
Limch1Q3UH68 Gm45453-201ENSMUST00000211758 853 ntBASIC16.4■□□□□ 0.22
Limch1Q3UH68 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 AC159649.2-201ENSMUST00000222984 3223 ntBASIC16.4■□□□□ 0.22
Limch1Q3UH68 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Limch1Q3UH68 Gm19863-201ENSMUST00000192480 2218 ntBASIC16.39■□□□□ 0.22
Limch1Q3UH68 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.22
Limch1Q3UH68 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC16.39■□□□□ 0.21
Limch1Q3UH68 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Shd-206ENSMUST00000225145 998 ntBASIC16.39■□□□□ 0.21
Limch1Q3UH68 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Limch1Q3UH68 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Limch1Q3UH68 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Limch1Q3UH68 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 56.3 ms