Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC12.38□□□□□ -0.43
Col5a1O88207 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Gm10156-201ENSMUST00000122364 462 ntBASIC12.38□□□□□ -0.43
Col5a1O88207 Gm16505-201ENSMUST00000179981 232 ntBASIC12.38□□□□□ -0.43
Col5a1O88207 Mir6979-201ENSMUST00000183927 56 ntBASIC12.38□□□□□ -0.43
Col5a1O88207 Mir7032-201ENSMUST00000185154 79 ntBASIC12.38□□□□□ -0.43
Col5a1O88207 Gm43947-201ENSMUST00000203019 959 ntBASIC12.38□□□□□ -0.43
Col5a1O88207 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Col5a1O88207 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC12.38□□□□□ -0.43
Col5a1O88207 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Gm13730-201ENSMUST00000121036 1462 ntBASIC12.37□□□□□ -0.43
Col5a1O88207 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC12.37□□□□□ -0.43
Col5a1O88207 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
Col5a1O88207 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Col5a1O88207 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Col5a1O88207 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Col5a1O88207 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Col5a1O88207 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Col5a1O88207 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Col5a1O88207 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC12.37□□□□□ -0.43
Col5a1O88207 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC12.37□□□□□ -0.43
Col5a1O88207 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Col5a1O88207 Gm7593-201ENSMUST00000187246 644 ntBASIC12.37□□□□□ -0.43
Col5a1O88207 Gm6621-201ENSMUST00000193251 772 ntBASIC12.37□□□□□ -0.43
Col5a1O88207 Gm17330-201ENSMUST00000221047 165 ntBASIC12.37□□□□□ -0.43
Col5a1O88207 CT030182.1-201ENSMUST00000225935 533 ntBASIC12.37□□□□□ -0.43
Col5a1O88207 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Col5a1O88207 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC12.37□□□□□ -0.43
Col5a1O88207 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
Col5a1O88207 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Col5a1O88207 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC12.37□□□□□ -0.43
Col5a1O88207 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Col5a1O88207 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Col5a1O88207 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC12.37□□□□□ -0.43
Col5a1O88207 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Col5a1O88207 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Gm37912-201ENSMUST00000191895 3076 ntBASIC12.37□□□□□ -0.43
Col5a1O88207 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Col5a1O88207 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC12.37□□□□□ -0.43
Col5a1O88207 Gm14263-201ENSMUST00000117955 746 ntBASIC12.37□□□□□ -0.43
Col5a1O88207 Gm13786-201ENSMUST00000122371 333 ntBASIC12.37□□□□□ -0.43
Col5a1O88207 Gm5637-201ENSMUST00000153890 1119 ntBASIC12.37□□□□□ -0.43
Col5a1O88207 Gm24514-201ENSMUST00000174961 285 ntBASIC12.37□□□□□ -0.43
Col5a1O88207 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC12.37□□□□□ -0.43
Col5a1O88207 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC12.37□□□□□ -0.43
Col5a1O88207 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Col5a1O88207 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Col5a1O88207 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col5a1O88207 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col5a1O88207 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col5a1O88207 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Col5a1O88207 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms