Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Prpf40aQ9R1C7 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Prpf40aQ9R1C7 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
Prpf40aQ9R1C7 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 BC001981-202ENSMUST00000191393 1545 ntBASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Gm44872-201ENSMUST00000207864 420 ntBASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 AC149588.3-201ENSMUST00000227515 150 ntBASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Gm45751-201ENSMUST00000210185 1573 ntBASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Prpf40aQ9R1C7 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 AC139382.1-201ENSMUST00000221402 498 ntBASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 AC121598.1-201ENSMUST00000228224 1019 ntBASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Prpf40aQ9R1C7 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Gm15957-201ENSMUST00000118893 974 ntBASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Prpf40aQ9R1C7 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms