Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Gm43433-201ENSMUST00000196573 481 ntBASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Gm45453-201ENSMUST00000211758 853 ntBASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Ushbp1Q8R370 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Gm15889-202ENSMUST00000212669 2443 ntBASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Gm24543-201ENSMUST00000103867 82 ntBASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Gm5566-201ENSMUST00000116118 459 ntBASIC15.65■□□□□ 0.1
Ushbp1Q8R370 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Ighv8-14-201ENSMUST00000196781 358 ntBASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Shd-206ENSMUST00000225145 998 ntBASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Gm12020-201ENSMUST00000119030 2042 ntBASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Ushbp1Q8R370 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Gm24694-201ENSMUST00000180054 110 ntBASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Gm27663-201ENSMUST00000184839 110 ntBASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Gm6745-201ENSMUST00000199216 526 ntBASIC15.64■□□□□ 0.09
Ushbp1Q8R370 AC139350.3-201ENSMUST00000226151 420 ntBASIC15.64■□□□□ 0.09
Ushbp1Q8R370 AC166491.1-201ENSMUST00000227053 2308 ntBASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Ushbp1Q8R370 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 45.5 ms