Protein–RNA interactions for Protein: Q5R1C3

Trav3-3, T cell receptor alpha variable 3-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-3Q5R1C3 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Gm8655-201ENSMUST00000221159 852 ntBASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 AC158538.2-201ENSMUST00000225455 906 ntBASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Gm4081-201ENSMUST00000195287 1838 ntBASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Trav3-3Q5R1C3 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Gm19817-201ENSMUST00000199764 2132 ntBASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Gm13722-201ENSMUST00000117964 3066 ntBASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
Trav3-3Q5R1C3 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 CT025678.1-201ENSMUST00000214795 2972 ntBASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 AC154747.3-201ENSMUST00000224471 3470 ntBASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
Trav3-3Q5R1C3 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms