Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Rfx1P48377 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
Rfx1P48377 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Rfx1P48377 Gm37795-201ENSMUST00000194216 2459 ntBASIC16.68■□□□□ 0.26
Rfx1P48377 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC16.68■□□□□ 0.26
Rfx1P48377 AC123645.1-201ENSMUST00000228469 605 ntBASIC16.68■□□□□ 0.26
Rfx1P48377 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC16.68■□□□□ 0.26
Rfx1P48377 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Rfx1P48377 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Rfx1P48377 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Rfx1P48377 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC16.67■□□□□ 0.26
Rfx1P48377 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC16.67■□□□□ 0.26
Rfx1P48377 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Rfx1P48377 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Gm12892-201ENSMUST00000117367 1146 ntBASIC16.67■□□□□ 0.26
Rfx1P48377 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC16.67■□□□□ 0.26
Rfx1P48377 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Gm7229-201ENSMUST00000214719 1007 ntBASIC16.67■□□□□ 0.26
Rfx1P48377 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC16.67■□□□□ 0.26
Rfx1P48377 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Rfx1P48377 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
Rfx1P48377 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Rfx1P48377 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
Rfx1P48377 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
Rfx1P48377 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Rfx1P48377 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Rfx1P48377 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Rfx1P48377 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Rfx1P48377 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
Rfx1P48377 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC16.66■□□□□ 0.26
Rfx1P48377 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC16.66■□□□□ 0.26
Rfx1P48377 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Rfx1P48377 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Rfx1P48377 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Rfx1P48377 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Rfx1P48377 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Gm37861-201ENSMUST00000193534 2869 ntBASIC16.65■□□□□ 0.26
Rfx1P48377 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC16.65■□□□□ 0.26
Rfx1P48377 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC16.65■□□□□ 0.26
Rfx1P48377 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
Rfx1P48377 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.65■□□□□ 0.26
Rfx1P48377 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC16.65■□□□□ 0.26
Rfx1P48377 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Rfx1P48377 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms