Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Gm43778-201ENSMUST00000199438 199 ntBASIC11.18□□□□□ -0.62
Chd6A3KFM7 Rasl11a-201ENSMUST00000031646 1126 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Hspb11-201ENSMUST00000046558 608 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Gm28324-201ENSMUST00000187913 264 ntBASIC11.18□□□□□ -0.62
Chd6A3KFM7 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Gm5049-201ENSMUST00000195878 1590 ntBASIC11.18□□□□□ -0.62
Chd6A3KFM7 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Celf4-206ENSMUST00000224553 1729 ntBASIC11.18□□□□□ -0.62
Chd6A3KFM7 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Chd6A3KFM7 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Gm8385-201ENSMUST00000058999 643 ntBASIC11.17□□□□□ -0.62
Chd6A3KFM7 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Mir671-201ENSMUST00000102432 98 ntBASIC11.17□□□□□ -0.62
Chd6A3KFM7 Gm13665-201ENSMUST00000120830 528 ntBASIC11.17□□□□□ -0.62
Chd6A3KFM7 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Gm27772-201ENSMUST00000184900 187 ntBASIC11.17□□□□□ -0.62
Chd6A3KFM7 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Gm7207-201ENSMUST00000211575 1067 ntBASIC11.17□□□□□ -0.62
Chd6A3KFM7 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Chd6A3KFM7 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Chd6A3KFM7 BC037039-201ENSMUST00000192003 2205 ntBASIC11.16□□□□□ -0.62
Chd6A3KFM7 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Chd6A3KFM7 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Chd6A3KFM7 Gm10434-201ENSMUST00000101158 471 ntBASIC11.16□□□□□ -0.62
Chd6A3KFM7 Gm13600-201ENSMUST00000117949 744 ntBASIC11.16□□□□□ -0.62
Chd6A3KFM7 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC11.16□□□□□ -0.62
Chd6A3KFM7 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC11.16□□□□□ -0.62
Chd6A3KFM7 Gm10051-201ENSMUST00000145209 414 ntBASIC11.16□□□□□ -0.62
Chd6A3KFM7 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC11.16□□□□□ -0.62
Chd6A3KFM7 Gm17391-201ENSMUST00000171036 126 ntBASIC11.16□□□□□ -0.62
Chd6A3KFM7 Gm23153-201ENSMUST00000175323 313 ntBASIC11.16□□□□□ -0.62
Chd6A3KFM7 Gm17330-201ENSMUST00000221047 165 ntBASIC11.16□□□□□ -0.62
Chd6A3KFM7 Gsto1-201ENSMUST00000026050 1182 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Chd6A3KFM7 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Chd6A3KFM7 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Chd6A3KFM7 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Chd6A3KFM7 Gm10146-201ENSMUST00000072739 309 ntBASIC11.16□□□□□ -0.62
Chd6A3KFM7 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms