Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Scn11aQ9R053 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Scn11aQ9R053 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Scn11aQ9R053 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC26.53■■□□□ 1.84
Scn11aQ9R053 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Scn11aQ9R053 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC26.52■■□□□ 1.84
Scn11aQ9R053 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC26.52■■□□□ 1.84
Scn11aQ9R053 AC153890.1-201ENSMUST00000220021 2469 ntBASIC26.51■■□□□ 1.83
Scn11aQ9R053 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Scn11aQ9R053 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Scn11aQ9R053 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Scn11aQ9R053 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
Scn11aQ9R053 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Scn11aQ9R053 Gm10232-201ENSMUST00000089221 720 ntBASIC26.51■■□□□ 1.83
Scn11aQ9R053 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC26.5■■□□□ 1.83
Scn11aQ9R053 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Scn11aQ9R053 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC26.5■■□□□ 1.83
Scn11aQ9R053 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Scn11aQ9R053 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Scn11aQ9R053 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Scn11aQ9R053 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC26.49■■□□□ 1.83
Scn11aQ9R053 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Scn11aQ9R053 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Scn11aQ9R053 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC26.48■■□□□ 1.83
Scn11aQ9R053 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Scn11aQ9R053 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Scn11aQ9R053 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Scn11aQ9R053 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Scn11aQ9R053 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Scn11aQ9R053 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Scn11aQ9R053 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Scn11aQ9R053 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC26.46■■□□□ 1.83
Scn11aQ9R053 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC26.45■■□□□ 1.83
Scn11aQ9R053 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.83
Scn11aQ9R053 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Scn11aQ9R053 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC26.45■■□□□ 1.82
Scn11aQ9R053 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Scn11aQ9R053 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC26.44■■□□□ 1.82
Scn11aQ9R053 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Scn11aQ9R053 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Scn11aQ9R053 Gm18755-201ENSMUST00000218030 1099 ntBASIC26.43■■□□□ 1.82
Scn11aQ9R053 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Scn11aQ9R053 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
Scn11aQ9R053 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Scn11aQ9R053 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC26.42■■□□□ 1.82
Scn11aQ9R053 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Scn11aQ9R053 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC26.41■■□□□ 1.82
Scn11aQ9R053 Gm42501-201ENSMUST00000200220 1026 ntBASIC26.41■■□□□ 1.82
Scn11aQ9R053 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC26.41■■□□□ 1.82
Scn11aQ9R053 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Scn11aQ9R053 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Scn11aQ9R053 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Scn11aQ9R053 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC26.4■■□□□ 1.82
Scn11aQ9R053 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Scn11aQ9R053 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
Scn11aQ9R053 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Scn11aQ9R053 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Scn11aQ9R053 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
Scn11aQ9R053 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
Scn11aQ9R053 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Scn11aQ9R053 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC26.38■■□□□ 1.81
Scn11aQ9R053 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Scn11aQ9R053 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Scn11aQ9R053 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC26.37■■□□□ 1.81
Scn11aQ9R053 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Scn11aQ9R053 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Scn11aQ9R053 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Scn11aQ9R053 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC26.35■■□□□ 1.81
Scn11aQ9R053 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
Scn11aQ9R053 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Scn11aQ9R053 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Scn11aQ9R053 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
Scn11aQ9R053 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Scn11aQ9R053 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC26.34■■□□□ 1.81
Scn11aQ9R053 Gm28536-201ENSMUST00000190971 1317 ntBASIC26.33■■□□□ 1.81
Scn11aQ9R053 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Scn11aQ9R053 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC26.33■■□□□ 1.81
Scn11aQ9R053 Gm5131-201ENSMUST00000212776 1238 ntBASIC26.33■■□□□ 1.81
Scn11aQ9R053 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Scn11aQ9R053 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Scn11aQ9R053 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Scn11aQ9R053 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Scn11aQ9R053 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Scn11aQ9R053 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC26.33■■□□□ 1.8
Scn11aQ9R053 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.8
Scn11aQ9R053 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
Scn11aQ9R053 Gm6934-201ENSMUST00000194780 1905 ntBASIC26.32■■□□□ 1.8
Scn11aQ9R053 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Scn11aQ9R053 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Scn11aQ9R053 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Scn11aQ9R053 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC26.31■■□□□ 1.8
Scn11aQ9R053 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Scn11aQ9R053 Gm16464-201ENSMUST00000117815 1095 ntBASIC26.31■■□□□ 1.8
Scn11aQ9R053 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC26.31■■□□□ 1.8
Scn11aQ9R053 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
Scn11aQ9R053 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Scn11aQ9R053 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Scn11aQ9R053 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
Scn11aQ9R053 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Scn11aQ9R053 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms