Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
Ushbp1Q8R370 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Ushbp1Q8R370 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ushbp1Q8R370 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
Ushbp1Q8R370 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
Ushbp1Q8R370 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Ushbp1Q8R370 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC24.39■■□□□ 1.49
Ushbp1Q8R370 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC24.39■■□□□ 1.49
Ushbp1Q8R370 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Ushbp1Q8R370 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
Ushbp1Q8R370 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC24.39■■□□□ 1.49
Ushbp1Q8R370 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Ushbp1Q8R370 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ushbp1Q8R370 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ushbp1Q8R370 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ushbp1Q8R370 Gm17641-201ENSMUST00000166328 2350 ntBASIC24.37■■□□□ 1.49
Ushbp1Q8R370 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ushbp1Q8R370 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ushbp1Q8R370 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
Ushbp1Q8R370 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ushbp1Q8R370 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Ushbp1Q8R370 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Ushbp1Q8R370 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Ushbp1Q8R370 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Ushbp1Q8R370 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Ushbp1Q8R370 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Ushbp1Q8R370 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
Ushbp1Q8R370 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Ushbp1Q8R370 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
Ushbp1Q8R370 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Ushbp1Q8R370 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
Ushbp1Q8R370 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Ushbp1Q8R370 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
Ushbp1Q8R370 Gm5522-201ENSMUST00000189483 1242 ntBASIC24.33■■□□□ 1.49
Ushbp1Q8R370 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
Ushbp1Q8R370 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Ushbp1Q8R370 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Ushbp1Q8R370 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC24.33■■□□□ 1.49
Ushbp1Q8R370 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Ushbp1Q8R370 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Ushbp1Q8R370 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
Ushbp1Q8R370 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Ushbp1Q8R370 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
Ushbp1Q8R370 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Ushbp1Q8R370 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
Ushbp1Q8R370 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
Ushbp1Q8R370 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
Ushbp1Q8R370 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Ushbp1Q8R370 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Ushbp1Q8R370 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
Ushbp1Q8R370 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
Ushbp1Q8R370 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Ushbp1Q8R370 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC24.29■■□□□ 1.48
Ushbp1Q8R370 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Ushbp1Q8R370 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
Ushbp1Q8R370 AC117769.4-201ENSMUST00000225679 685 ntBASIC24.29■■□□□ 1.48
Ushbp1Q8R370 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ushbp1Q8R370 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Ushbp1Q8R370 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
Ushbp1Q8R370 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC24.28■■□□□ 1.48
Ushbp1Q8R370 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC24.28■■□□□ 1.48
Ushbp1Q8R370 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
Ushbp1Q8R370 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
Ushbp1Q8R370 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ushbp1Q8R370 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Ushbp1Q8R370 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ushbp1Q8R370 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Ushbp1Q8R370 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Ushbp1Q8R370 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC24.27■■□□□ 1.48
Ushbp1Q8R370 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Ushbp1Q8R370 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC24.26■■□□□ 1.47
Ushbp1Q8R370 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Ushbp1Q8R370 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Ushbp1Q8R370 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Ushbp1Q8R370 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC24.26■■□□□ 1.47
Ushbp1Q8R370 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Ushbp1Q8R370 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
Ushbp1Q8R370 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Ushbp1Q8R370 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Ushbp1Q8R370 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Ushbp1Q8R370 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC24.25■■□□□ 1.47
Ushbp1Q8R370 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Ushbp1Q8R370 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Ushbp1Q8R370 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ushbp1Q8R370 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ushbp1Q8R370 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ushbp1Q8R370 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Ushbp1Q8R370 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Ushbp1Q8R370 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC24.24■■□□□ 1.47
Ushbp1Q8R370 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
Ushbp1Q8R370 AC093043.1-201ENSMUST00000226700 898 ntBASIC24.24■■□□□ 1.47
Ushbp1Q8R370 AC117245.4-201ENSMUST00000217388 1646 ntBASIC24.24■■□□□ 1.47
Ushbp1Q8R370 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC24.23■■□□□ 1.47
Ushbp1Q8R370 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC24.23■■□□□ 1.47
Ushbp1Q8R370 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Ushbp1Q8R370 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Ushbp1Q8R370 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ushbp1Q8R370 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Ushbp1Q8R370 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Ushbp1Q8R370 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Retrieved 100 of 76,532 protein–RNA pairs in 134 ms