Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Limch1Q3UH68 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Limch1Q3UH68 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
Limch1Q3UH68 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
Limch1Q3UH68 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Limch1Q3UH68 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Limch1Q3UH68 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
Limch1Q3UH68 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Limch1Q3UH68 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
Limch1Q3UH68 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Limch1Q3UH68 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Limch1Q3UH68 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
Limch1Q3UH68 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Limch1Q3UH68 AC153524.1-201ENSMUST00000220436 1935 ntBASIC25.57■■□□□ 1.68
Limch1Q3UH68 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC25.57■■□□□ 1.68
Limch1Q3UH68 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Limch1Q3UH68 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC25.57■■□□□ 1.68
Limch1Q3UH68 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Limch1Q3UH68 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Limch1Q3UH68 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
Limch1Q3UH68 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Limch1Q3UH68 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Limch1Q3UH68 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.68
Limch1Q3UH68 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Limch1Q3UH68 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC25.55■■□□□ 1.68
Limch1Q3UH68 Gm44428-201ENSMUST00000204474 874 ntBASIC25.55■■□□□ 1.68
Limch1Q3UH68 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
Limch1Q3UH68 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Limch1Q3UH68 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
Limch1Q3UH68 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
Limch1Q3UH68 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
Limch1Q3UH68 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC25.54■■□□□ 1.68
Limch1Q3UH68 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
Limch1Q3UH68 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
Limch1Q3UH68 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
Limch1Q3UH68 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
Limch1Q3UH68 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Limch1Q3UH68 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Limch1Q3UH68 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Limch1Q3UH68 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Limch1Q3UH68 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
Limch1Q3UH68 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Limch1Q3UH68 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Limch1Q3UH68 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Limch1Q3UH68 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Limch1Q3UH68 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC25.52■■□□□ 1.68
Limch1Q3UH68 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Limch1Q3UH68 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.68
Limch1Q3UH68 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Limch1Q3UH68 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Limch1Q3UH68 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Limch1Q3UH68 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Limch1Q3UH68 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
Limch1Q3UH68 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
Limch1Q3UH68 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
Limch1Q3UH68 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
Limch1Q3UH68 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
Limch1Q3UH68 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Limch1Q3UH68 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC25.49■■□□□ 1.67
Limch1Q3UH68 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC25.49■■□□□ 1.67
Limch1Q3UH68 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Limch1Q3UH68 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
Limch1Q3UH68 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
Limch1Q3UH68 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
Limch1Q3UH68 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Limch1Q3UH68 Gm22567-201ENSMUST00000175542 342 ntBASIC25.48■■□□□ 1.67
Limch1Q3UH68 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Limch1Q3UH68 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Limch1Q3UH68 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
Limch1Q3UH68 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
Limch1Q3UH68 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
Limch1Q3UH68 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Limch1Q3UH68 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Limch1Q3UH68 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Limch1Q3UH68 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Limch1Q3UH68 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Limch1Q3UH68 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Limch1Q3UH68 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Limch1Q3UH68 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC25.44■■□□□ 1.66
Limch1Q3UH68 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Limch1Q3UH68 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC25.44■■□□□ 1.66
Limch1Q3UH68 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC25.44■■□□□ 1.66
Limch1Q3UH68 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC25.44■■□□□ 1.66
Limch1Q3UH68 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Limch1Q3UH68 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Limch1Q3UH68 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC25.43■■□□□ 1.66
Limch1Q3UH68 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Limch1Q3UH68 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
Limch1Q3UH68 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
Limch1Q3UH68 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC25.43■■□□□ 1.66
Limch1Q3UH68 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Limch1Q3UH68 AC117769.4-201ENSMUST00000225679 685 ntBASIC25.42■■□□□ 1.66
Limch1Q3UH68 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Limch1Q3UH68 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
Limch1Q3UH68 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Limch1Q3UH68 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Limch1Q3UH68 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
Limch1Q3UH68 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC25.4■■□□□ 1.66
Limch1Q3UH68 AC117245.4-201ENSMUST00000217388 1646 ntBASIC25.4■■□□□ 1.66
Limch1Q3UH68 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms