Protein–RNA interactions for Protein: Q09XV5

Chd8, Chromodomain-helicase-DNA-binding protein 8, mousemouse

Known RBP Predictions only

Length 2,582 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd8Q09XV5 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Chd8Q09XV5 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Chd8Q09XV5 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Chd8Q09XV5 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC20.4■□□□□ 0.86
Chd8Q09XV5 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Chd8Q09XV5 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Chd8Q09XV5 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Chd8Q09XV5 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Chd8Q09XV5 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.38■□□□□ 0.85
Chd8Q09XV5 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.38■□□□□ 0.85
Chd8Q09XV5 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Chd8Q09XV5 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
Chd8Q09XV5 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chd8Q09XV5 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chd8Q09XV5 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Chd8Q09XV5 AC158538.1-201ENSMUST00000225870 294 ntBASIC20.37■□□□□ 0.85
Chd8Q09XV5 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chd8Q09XV5 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chd8Q09XV5 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chd8Q09XV5 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC20.37■□□□□ 0.85
Chd8Q09XV5 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Chd8Q09XV5 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Chd8Q09XV5 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.36■□□□□ 0.85
Chd8Q09XV5 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC20.35■□□□□ 0.85
Chd8Q09XV5 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Chd8Q09XV5 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.35■□□□□ 0.85
Chd8Q09XV5 Gm42569-201ENSMUST00000200539 472 ntBASIC20.35■□□□□ 0.85
Chd8Q09XV5 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Chd8Q09XV5 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC20.35■□□□□ 0.85
Chd8Q09XV5 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chd8Q09XV5 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chd8Q09XV5 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Chd8Q09XV5 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC20.34■□□□□ 0.85
Chd8Q09XV5 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC20.34■□□□□ 0.85
Chd8Q09XV5 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC20.34■□□□□ 0.85
Chd8Q09XV5 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chd8Q09XV5 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Chd8Q09XV5 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC20.34■□□□□ 0.85
Chd8Q09XV5 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Chd8Q09XV5 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chd8Q09XV5 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Chd8Q09XV5 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Chd8Q09XV5 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC20.33■□□□□ 0.85
Chd8Q09XV5 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Chd8Q09XV5 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Chd8Q09XV5 Gm14121-201ENSMUST00000121441 1380 ntBASIC20.33■□□□□ 0.84
Chd8Q09XV5 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Chd8Q09XV5 Gm7977-201ENSMUST00000193787 748 ntBASIC20.33■□□□□ 0.84
Chd8Q09XV5 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Chd8Q09XV5 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chd8Q09XV5 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Chd8Q09XV5 Gm6658-202ENSMUST00000209493 1885 ntBASIC20.31■□□□□ 0.84
Chd8Q09XV5 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chd8Q09XV5 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Chd8Q09XV5 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chd8Q09XV5 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chd8Q09XV5 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC20.31■□□□□ 0.84
Chd8Q09XV5 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chd8Q09XV5 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.3■□□□□ 0.84
Chd8Q09XV5 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC20.3■□□□□ 0.84
Chd8Q09XV5 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Chd8Q09XV5 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC20.29■□□□□ 0.84
Chd8Q09XV5 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Chd8Q09XV5 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Chd8Q09XV5 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Chd8Q09XV5 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Chd8Q09XV5 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Chd8Q09XV5 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Chd8Q09XV5 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Chd8Q09XV5 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Chd8Q09XV5 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chd8Q09XV5 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC20.27■□□□□ 0.84
Chd8Q09XV5 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Chd8Q09XV5 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.27■□□□□ 0.84
Chd8Q09XV5 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.27■□□□□ 0.83
Chd8Q09XV5 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Chd8Q09XV5 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20.27■□□□□ 0.83
Chd8Q09XV5 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Chd8Q09XV5 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Chd8Q09XV5 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chd8Q09XV5 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC20.26■□□□□ 0.83
Chd8Q09XV5 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Chd8Q09XV5 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Chd8Q09XV5 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.26■□□□□ 0.83
Chd8Q09XV5 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chd8Q09XV5 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Chd8Q09XV5 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC20.25■□□□□ 0.83
Chd8Q09XV5 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Chd8Q09XV5 Gm42642-201ENSMUST00000200683 355 ntBASIC20.25■□□□□ 0.83
Chd8Q09XV5 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Chd8Q09XV5 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Chd8Q09XV5 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Chd8Q09XV5 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chd8Q09XV5 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.23■□□□□ 0.83
Chd8Q09XV5 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chd8Q09XV5 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chd8Q09XV5 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Chd8Q09XV5 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Chd8Q09XV5 Mir7075-201ENSMUST00000184187 82 ntBASIC20.22■□□□□ 0.83
Chd8Q09XV5 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC20.22■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 15 ms